Metabolic pathways are enzyme-mediated biochemical reactions that lead to biosynthesis (anabolism) or breakdown (catabolism) of natural product small molecules within a cell or tissue. In each pathway, enzymes catalyze the conversion of substrates into structurally similar products. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. Metabolism maintains the living state of the cells and the organism.

Proteases are used throughout an organism for various metabolic processes. Proteases control a great variety of physiological processes that are critical for life, including the immune response, cell cycle, cell death, wound healing, food digestion, and protein and organelle recycling. On the basis of the type of the key amino acid in the active site of the protease and the mechanism of peptide bond cleavage, proteases can be classified into six groups: cysteine, serine, threonine, glutamic acid, aspartate proteases, as well as matrix metalloproteases. Proteases can not only activate proteins such as cytokines, or inactivate them such as numerous repair proteins during apoptosis, but also expose cryptic sites, such as occurs with β-secretase during amyloid precursor protein processing, shed various transmembrane proteins such as occurs with metalloproteases and cysteine proteases, or convert receptor agonists into antagonists and vice versa such as chemokine conversions carried out by metalloproteases, dipeptidyl peptidase IV and some cathepsins. In addition to the catalytic domains, a great number of proteases contain numerous additional domains or modules that substantially increase the complexity of their functions.

Imbalances in metabolic activities have been found to be critical in a number of pathologies, such as cardiovascular diseases, inflammation, cancer, and neurodegenerative diseases.

References:
[1] Turk B, et al. EMBO J. 2012 Apr 4;31(7):1630-43.
[2] Eatemadi A, et al. Biomed Pharmacother. 2017 Feb;86:221-231.


Anti-infection >
Arenavirus Bacterial CMV Enterovirus Filovirus Fungal HBV HCV HIV HSV Influenza Virus Parasite Reverse Transcriptase RSV SARS-CoV
Antibody-drug Conjugate >
ADC Cytotoxin ADC Linker Drug-Linker Conjugates for ADC PROTAC-linker Conjugate for PAC
Apoptosis >
Apoptosis Bcl-2 Family c-Myc Caspase DAPK Ferroptosis IAP MDM-2/p53 PKD RIP kinase Survivin Thymidylate Synthase TNF Receptor
Autophagy >
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Antifolate APC ATM/ATR Aurora Kinase Casein Kinase CDK Checkpoint Kinase (Chk) CRISPR/Cas9 Deubiquitinase DNA Alkylator/Crosslinker DNA-PK DNA/RNA Synthesis Eukaryotic Initiation Factor (eIF) G-quadruplex Haspin Kinase HDAC HSP IRE1 Kinesin LIM Kinase (LIMK) Microtubule/Tubulin Mps1 Nucleoside Antimetabolite/Analog p97 PAK PARP PERK Polo-like Kinase (PLK) PPAR RAD51 ROCK Sirtuin SRPK Telomerase TOPK Topoisomerase Wee1
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ERK JNK KLF MAP3K MAP4K MAPKAPK2 (MK2) MEK Mixed Lineage Kinase MNK p38 MAPK Raf Ribosomal S6 Kinase (RSK)
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Metabolic Enzyme/Protease >
15-PGDH 5 alpha Reductase 5-Lipoxygenase Acetyl-CoA Carboxylase Acyltransferase Adenosine Deaminase Adenosine Kinase Aldehyde Dehydrogenase (ALDH) Aldose Reductase Aminopeptidase Angiotensin-converting Enzyme (ACE) ATGL ATP Citrate Lyase Carbonic Anhydrase Carboxypeptidase Cathepsin CETP COMT Cytochrome P450 Dipeptidyl Peptidase Dopamine β-hydroxylase E1/E2/E3 Enzyme Elastase Enolase FAAH FABP Factor Xa Farnesyl Transferase Fatty Acid Synthase (FAS) FXR Glucokinase GSNOR Gutathione S-transferase HCV Protease Hexokinase HIF/HIF Prolyl-Hydroxylase HIV Integrase HIV Protease HMG-CoA Reductase (HMGCR) HSP Indoleamine 2,3-Dioxygenase (IDO) Isocitrate Dehydrogenase (IDH) Lactate Dehydrogenase LXR MAGL Mineralocorticoid Receptor Mitochondrial Metabolism MMP Nampt NEDD8-activating Enzyme Neprilysin PAI-1 PDHK PGC-1α Phosphatase Phosphodiesterase (PDE) Phospholipase Procollagen C Proteinase Proteasome Pyruvate Kinase RAR/RXR Renin ROR Ser/Thr Protease SGK Stearoyl-CoA Desaturase (SCD) Thrombin Tryptophan Hydroxylase Tyrosinase Xanthine Oxidase
Neuronal Signaling >
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NF-κB >
NF-κB IKK Keap1-Nrf2 MALT1
PI3K/Akt/mTOR >
Akt AMPK ATM/ATR DNA-PK GSK-3 MELK mTOR PDK-1 PI3K PI4K PIKfyve PTEN
PROTAC >
PROTAC E3 Ligase Ligand-Linker Conjugate Ligand for E3 Ligase PROTAC Linker PROTAC-linker Conjugate for PAC
Protein Tyrosine Kinase/RTK >
Ack1 ALK Bcr-Abl BMX Kinase Btk c-Fms c-Kit c-Met/HGFR Discoidin Domain Receptor DYRK EGFR Ephrin Receptor FAK FGFR FLT3 IGF-1R Insulin Receptor IRAK Itk PDGFR PKA Pyk2 ROS Src Syk TAM Receptor Trk Receptor VEGFR
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Casein Kinase ERK Gli GSK-3 Hedgehog Hippo (MST) JAK Notch Oct3/4 PKA Porcupine ROCK sFRP-1 Smo STAT TGF-beta/Smad Wnt YAP β-catenin γ-secretase
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HIF-2α-IN-3

HIF-2α-IN-3, an allosteric inhibitor of hypoxia inducible factor-2α (HIF-2α), exhibits an IC50 of 0.4 µM and a KD of 1.1 µM. Anticancer agent[1].

  • CAS Number: 313964-19-1
  • MF: C12H6ClN5O5
  • MW: 335.66
  • Catalog: HIF/HIF Prolyl-Hydroxylase
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

(E/Z)-BCI

(E/Z)-BCI (NSC 150117) is a dual-specificity phosphatase 6 (DUSP6) inhibitor with anti-inflammatory activities. (E/Z)-BCI attenuates LPS-induced inflammatory mediators and ROS production in macrophage cells via activating the Nrf2 signaling axis and inhibiting the NF-κB pathway[1].

  • CAS Number: 15982-84-0
  • MF: C22H23NO
  • MW: 317.42
  • Catalog: Phosphatase
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

2,5-Dihydroxycinnamic Acid phenethyl ester

5-LOX-IN-2, an inhibitor of 5-lipoxygenase (5-LOX) with an IC50 of 0.33 μM, inhibits 5-LOX in a dose-dependent manner . 5-LOX-IN-2, reduces the cell viability of renal cancer cells and induces apoptosis, can be used for cancer research[1].

  • CAS Number: 179691-97-5
  • MF: C17H16O4
  • MW: 284.31
  • Catalog: 5-Lipoxygenase
  • Density: 1.3±0.1 g/cm3
  • Boiling Point: 515.5±50.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 192.2±23.6 °C

Toddacoumalone

Toddacoumalone is a natural inhibitor of phosphodiesterase 4 (PDE4) with moderate potency and imperfect drug-like properties. Toddacoumalone has the potential for the research of inflammatory diseases such as psoriasis[1].

  • CAS Number: 139750-79-1
  • MF: C31H31NO6
  • MW: 513.58
  • Catalog: Phosphodiesterase (PDE)
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

CDP 840 hydrochloride

CDP-840 (GR259653X) is a potent, selective and orally active phosphodiesterase IV (PDE IV) inhibitor. CDP-840 inhibits antigen-induced early and late phase bronchoconstriction in conscious squirrel monkeys[1].

  • CAS Number: 162542-90-7
  • MF: C25H27NO2
  • MW: 373.49
  • Catalog: Phosphodiesterase (PDE)
  • Density: 1.122g/cm3
  • Boiling Point: 489.9ºC at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 174.3ºC

lavendustin B

Lavendustin B is an inhibitor of HIV-1 integrase interaction with LEDGF/p75 with an IC50 of 94.07 μM. Lavendustin B is an ATP-competitive GLUT1 inhibitor with a Ki of 15 µM. Lavendustin B is also a weak inhibitor of tyrosine kinases[1][2].

  • CAS Number: 125697-91-8
  • MF: C21H19NO5
  • MW: 365.37900
  • Catalog: HIV Integrase
  • Density: 1.423 g/cm3
  • Boiling Point: 671.1ºC at 760 mmHg
  • Melting Point: 140-144ºC
  • Flash Point: 359.7ºC

YH-306

YH-306 is a candidate drug in preventing growth and metastasis of colorectal cancer by modulating FAK signalling pathway.

  • CAS Number: 1373764-75-0
  • MF: C19H18N2O2
  • MW: 306.36
  • Catalog: Apoptosis
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

MJ33

MJ33 is an active-site-directed, specific, competitive, and reversible phospholipase A2 (PLA2) inhibitor. MJ33 blocks the calcium-independent phospholipase A2 (iPLA2) activity of Prdx6[1]. MJ33 has a critical effect on inflammatory brain damage[2].

  • CAS Number: 199106-13-3
  • MF: C22H44F3O7P
  • MW: 498.48300
  • Catalog: Phospholipase
  • Density: N/A
  • Boiling Point: 522.7ºC at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 269.9ºC

MG-262

MG-262 is a reversible proteasome inhibitor with diverse biological activities[1][2][3].

  • CAS Number: 179324-22-2
  • MF: C25H42BN3O6
  • MW: 491.42800
  • Catalog: Proteasome
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Quinine bisulfate

Quinidine is an antiarrhythmic agent. Quinidine is a potent, orally active, selective cytochrome P450db inhibitor. Quinidine is also a K+ channel blocker with an IC50 of 19.9 μM. Quinidine can be used for malaria research[1][2][3].

  • CAS Number: 549-56-4
  • MF: C40H50N4O8S
  • MW: 746.91200
  • Catalog: Potassium Channel
  • Density: N/A
  • Boiling Point: 1136.7ºC at 760mmHg
  • Melting Point: N/A
  • Flash Point: 641.2ºC

Lopinavir

Lopinavir is a potent HIV protease inhibitor with Ki of 1.3 pM.Target: HIV proteaseLopinavir is a potent inhibitor of Rh123 efflux in Caco-2 monolayers with IC50 of 1.7 mM. Lopinavir exposure (72 hours) in LS 180V cells reduces the content of intracellular Rh123. Lopinavir induces P-glycoprotein immunoreactive protein and messenger RNA levels in LS 180V cells. Lopinavir inhibits subtype C clone C6 with IC50 of 9.4 nM. Lopinavir inhibits CYP3A with IC50 of 7.3 mM in human liver microsomes, while produces negligible or weak inhibition of human CYP1A2, 2B6, 2C9, 2C19 and 2D6. Lopinavir (10 mg/kg, orally) results in Cmax of 0.8 μg/mL and oral bioavailability of 25% in rats.

  • CAS Number: 192725-17-0
  • MF: C37H48N4O5
  • MW: 628.801
  • Catalog: HIV
  • Density: 1.2±0.1 g/cm3
  • Boiling Point: 924.2±65.0 °C at 760 mmHg
  • Melting Point: 124-127°C
  • Flash Point: 512.7±34.3 °C

Simeprevir

Simeprevir is a potent HCV NS3/4A protease inhibitor which suppresses HCV replication with EC50 of 8 nM.

  • CAS Number: 923604-59-5
  • MF: C38H47N5O7S2
  • MW: 749.939
  • Catalog: HCV
  • Density: 1.4±0.1 g/cm3
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

C75

C75 is a synthetic fatty-acid synthase (FASN) inhibitor; inhibits prostate cancer cells PC3 with an IC50 of 35 μM.

  • CAS Number: 218137-86-1
  • MF: C14H22O4
  • MW: 254.322
  • Catalog: Fatty Acid Synthase (FAS)
  • Density: 1.1±0.1 g/cm3
  • Boiling Point: 432.1±45.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 159.2±22.2 °C

HMB-Val-Ser-Leu-VE

HMB-Val-Ser-Leu-VE is a prototype vinyl ester inhibitor. HMB-Val-Ser-Leu-VE is against trypsin-like (T-L) proteasome activity with an IC50 of 0.033 μM[1].

  • CAS Number: 862891-04-1
  • MF: C26H39N3O7
  • MW: 505.60
  • Catalog: Ser/Thr Protease
  • Density: 1.2±0.1 g/cm3
  • Boiling Point: 754.1±60.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 409.8±32.9 °C

QH536

QH536 (Compound 29) is a potent HMGCR degrader with an EC50 of 0.22 μM. QH536 has no side-effect of inducing cholesterol accumulation in cells. QH536 shows anti-inflammatory and can be used for cardiovascular disease and nonalcoholic steatohepatitis research[1].

  • CAS Number: 2754254-07-2
  • MF: C33H49N3O3
  • MW: 535.76
  • Catalog: HMG-CoA Reductase (HMGCR)
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

HIF-2α-IN-1

HIF-2α-IN-1 is a HIF-2α inhibitor has an IC50 of less than 500 nM in HIF-2α scintillation proximity assay.IC50 value: < 500 nMTarget: HIF-2α

  • CAS Number: 1799948-06-3
  • MF: C16H8F5NO4S
  • MW: 405.296
  • Catalog: HIF/HIF Prolyl-Hydroxylase
  • Density: 1.7±0.1 g/cm3
  • Boiling Point: 499.8±45.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 256.1±28.7 °C

RMC-4550

RMC-4550 is a potent, selective and allosteric inhibitor of SHP2, with an IC50 of 0.583 nM.

  • CAS Number: 2172651-73-7
  • MF: C21H26Cl2N4O2
  • MW: 437.36
  • Catalog: Phosphatase
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

SR2211

SR2211 is a potent, selective synthetic RORγ modulator and functions as an inverse agonist, with a Ki of 105 nM and an IC50 of ~320 nM.

  • CAS Number: 1359164-11-6
  • MF: C26H24F7N3O
  • MW: 527.477
  • Catalog: ROR
  • Density: 1.4±0.1 g/cm3
  • Boiling Point: 552.4±50.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 287.9±30.1 °C

IDO-IN-14

IDO-IN-14 is an IDO inhibitor with an IC50 value of 0.6928 nM.

  • CAS Number: 2568302-02-1
  • MF: C23H23ClN4O2
  • MW: 422.91
  • Catalog: Indoleamine 2,3-Dioxygenase (IDO)
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Smurf1-IN-1

Smurf1-IN-1 is an orally active and selective inhibitor of specific E3 ubiquitin protein ligase 1 (SMURF1) with an IC50 of 92 nM. Smurf1-IN-1 has significant efficacy in rats model of pulmonary hypertension[1].

  • CAS Number: 1824708-03-3
  • MF: C24H29ClN6O2
  • MW: 468.98
  • Catalog: E1/E2/E3 Enzyme
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

lithium,[(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyl-5,5a,8a,8b-tetrahydrodi[1,3]dioxolo[4,5-a:5',3'-d]pyran-3a-yl]methoxysulfonylazanide

Topiramate (McN 4853) lithium is a broad-spectrum antiepileptic agent. Topiramate lithium is a GluR5 receptor antagonist. Topiramate produces its antiepileptic effects through enhancement of GABAergic activity, inhibition of kainate/AMPA receptors, inhibition of voltage-sensitive sodium and calcium channels, increases in potassium conductance, and inhibition of carbonic anhydrase[1][2][3].

  • CAS Number: 488127-53-3
  • MF: C12H20LiNO8S
  • MW: 345.29500
  • Catalog: Calcium Channel
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Eupalinolide B

Eupalinolide A, isolated from Eupatorium lindleyanum, induces the expression of HSP70 via the activation of HSF1 by inhibiting the interaction between HSF1 and HSP90[1].

  • CAS Number: 877822-40-7
  • MF: C24H30O9
  • MW: 462.490
  • Catalog: HSP
  • Density: 1.24±0.1 g/cm3 (20 ºC 760 Torr)
  • Boiling Point: 618.6±55.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 205.4±25.0 °C

WX 671

Upamostat is a serine protease inhibitor. Upamostat is the orally available prodrug of the WX-UK1, which is a urokinase plasminogen activator (uPA) inhibitor.

  • CAS Number: 590368-25-5
  • MF: C32H47N5O6S
  • MW: 629.81000
  • Catalog: Ser/Thr Protease
  • Density: 1.25
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

TAPI-2

TAPI-2 is a broad-spectrum inhibitor of matrix metalloprotease (MMP), tumour necrosis factorα-converting enzyme (TACE) and a disintegrin and metalloproteinase (ADAM), with an IC50 of 20±10 μM for MMP.

  • CAS Number: 187034-31-7
  • MF: C19H37N5O5
  • MW: 415.528
  • Catalog: MMP
  • Density: 1.1±0.1 g/cm3
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Palovarotene

Palovarotene is a nuclear retinoic acid receptor γ (RAR-γ) agonist.

  • CAS Number: 410528-02-8
  • MF: C27H30N2O2
  • MW: 414.539
  • Catalog: RAR/RXR
  • Density: 1.1±0.1 g/cm3
  • Boiling Point: 592.3±50.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 312.0±30.1 °C

Bradykinin Potentiator C

Bradykinin potentiator C is a potent angiotensin-converting enzyme (ACE) inhibitor with an IC50 of 7.1 μM for rabbit lung ACE. Bradykinin potentiator C is a postulated prototype of functional peptide[1].

  • CAS Number: 30953-20-9
  • MF: C51H77N11O13
  • MW: 1052.22000
  • Catalog: Angiotensin-converting Enzyme (ACE)
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

KS106

KS106 is a potent ALDH inhibitor with IC50s of 334, 2137, 360 nM for ALDH1A1, ALDH2, and ALDH3A1, respectively. KS106 shows antiproliferative and anticancer effects with low low toxic.KS106 significantly increases ROS activity, lipid peroxidation and toxic aldehyde accumulation. KS106 induces apoptosis and cell cycle arrest at the G2/M phase[1].

  • CAS Number: 2408477-50-7
  • MF: C18H15BrF3N3O2S
  • MW: 474.29
  • Catalog: Apoptosis
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

6,7,8-Trimethoxycoumarin

Dimethylfraxetin is a Carbonic anhydrase inhibitor, with a Ki value of 0.0097 μM.

  • CAS Number: 6035-49-0
  • MF: C12H12O5
  • MW: 236.221
  • Catalog: Carbonic Anhydrase
  • Density: 1.2±0.1 g/cm3
  • Boiling Point: 408.0±45.0 °C at 760 mmHg
  • Melting Point: 104-105ºC
  • Flash Point: 184.3±28.8 °C

Quinapril hydrochloride

Quinapril is a prodrug that belongs to the angiotensin-converting enzyme (ACE) inhibitor class of medications.Target: ACEQuinapril is an angiotensin-converting enzyme inhibitor (ACE inhibitor) used in the treatment of hypertension and congestive heart failure. Quinapril is rapidly de-esterified after absorption to quinaprilat (the active diacid metabolite), a potent angiotensin converting enzyme (ACE) inhibitor. Quinapril is now firmly established as an effective and well tolerated ACE inhibitor for the treatment of patients with hypertension and congestive heart failure. Quinapril 40 mg/day also significantly reduced the incidence of ischaemic events in patients undergoing CABG in one study [1, 2]. An overview of 32 clinical trials of ACE inhibitors in heart failure showed that no significant heterogeneity in mortality was found among enalapril, ramipril, quinapril, captopril, lisinopril, benazepril, perindopril and cilazapril. Initiation of therapy with captopril, ramipril, and trandolapril at least 3 days after an acute MI resulted in all-cause mortality risk reductions of 18 to 27% [3].

  • CAS Number: 82586-55-8
  • MF: C25H31ClN2O5
  • MW: 474.977
  • Catalog: Angiotensin-converting Enzyme (ACE)
  • Density: N/A
  • Boiling Point: 662ºC at 760 mmHg
  • Melting Point: 120-130ºC
  • Flash Point: 354.1ºC

Aschantin

Aschantin, a bisepoxylignan, can be isolated from Magnolia biondii. Aschantin has antiplasmodial, Ca2+-antagonistic, platelet activating factor-antagonistic, and chemopreventive activities. Aschantin is a mTOR kinase inhibitor. Aschantin is also an inhibitor of Cytochrome P450 and UGT enzyme[1][2].

  • CAS Number: 13060-15-6
  • MF: C22H24O7
  • MW: 400.42
  • Catalog: Cytochrome P450
  • Density: 1.3±0.1 g/cm3
  • Boiling Point: 525.8±50.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 214.7±30.0 °C