Metabolic pathways are enzyme-mediated biochemical reactions that lead to biosynthesis (anabolism) or breakdown (catabolism) of natural product small molecules within a cell or tissue. In each pathway, enzymes catalyze the conversion of substrates into structurally similar products. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. Metabolism maintains the living state of the cells and the organism.

Proteases are used throughout an organism for various metabolic processes. Proteases control a great variety of physiological processes that are critical for life, including the immune response, cell cycle, cell death, wound healing, food digestion, and protein and organelle recycling. On the basis of the type of the key amino acid in the active site of the protease and the mechanism of peptide bond cleavage, proteases can be classified into six groups: cysteine, serine, threonine, glutamic acid, aspartate proteases, as well as matrix metalloproteases. Proteases can not only activate proteins such as cytokines, or inactivate them such as numerous repair proteins during apoptosis, but also expose cryptic sites, such as occurs with β-secretase during amyloid precursor protein processing, shed various transmembrane proteins such as occurs with metalloproteases and cysteine proteases, or convert receptor agonists into antagonists and vice versa such as chemokine conversions carried out by metalloproteases, dipeptidyl peptidase IV and some cathepsins. In addition to the catalytic domains, a great number of proteases contain numerous additional domains or modules that substantially increase the complexity of their functions.

Imbalances in metabolic activities have been found to be critical in a number of pathologies, such as cardiovascular diseases, inflammation, cancer, and neurodegenerative diseases.

References:
[1] Turk B, et al. EMBO J. 2012 Apr 4;31(7):1630-43.
[2] Eatemadi A, et al. Biomed Pharmacother. 2017 Feb;86:221-231.


Anti-infection >
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Metabolic Enzyme/Protease >
15-PGDH 5 alpha Reductase 5-Lipoxygenase Acetyl-CoA Carboxylase Acyltransferase Adenosine Deaminase Adenosine Kinase Aldehyde Dehydrogenase (ALDH) Aldose Reductase Aminopeptidase Angiotensin-converting Enzyme (ACE) ATGL ATP Citrate Lyase Carbonic Anhydrase Carboxypeptidase Cathepsin CETP COMT Cytochrome P450 Dipeptidyl Peptidase Dopamine β-hydroxylase E1/E2/E3 Enzyme Elastase Enolase FAAH FABP Factor Xa Farnesyl Transferase Fatty Acid Synthase (FAS) FXR Glucokinase GSNOR Gutathione S-transferase HCV Protease Hexokinase HIF/HIF Prolyl-Hydroxylase HIV Integrase HIV Protease HMG-CoA Reductase (HMGCR) HSP Indoleamine 2,3-Dioxygenase (IDO) Isocitrate Dehydrogenase (IDH) Lactate Dehydrogenase LXR MAGL Mineralocorticoid Receptor Mitochondrial Metabolism MMP Nampt NEDD8-activating Enzyme Neprilysin PAI-1 PDHK PGC-1α Phosphatase Phosphodiesterase (PDE) Phospholipase Procollagen C Proteinase Proteasome Pyruvate Kinase RAR/RXR Renin ROR Ser/Thr Protease SGK Stearoyl-CoA Desaturase (SCD) Thrombin Tryptophan Hydroxylase Tyrosinase Xanthine Oxidase
Neuronal Signaling >
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NF-κB >
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PROTAC >
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Protein Tyrosine Kinase/RTK >
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ML-209

(±)-ML 209 (compound 4n), a diphenylpropanamide, is a retinoic acid-related orphan receptor RORγ antagonist with an IC50 of 1.1 μM. (±)-ML 209 inhibits RORγt transcriptional activity with an IC50 of 300 nM in HEK293t cells. (±)-ML 209 inhibits the transcriptional activity of RORγt, but not RORα in cells. (±)-ML 209 selectively inhibits murine Th17 cell differentiation without affecting the differentiation of naïve CD4+ T cells into other lineages, including Th1 and regulatory T cells[1].

  • Density: 1.2±0.1 g/cm3
  • Boiling Point: 656.2±55.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 350.7±31.5 °C

L-Adenosine

L-Adenosine is a metabolically stable enantiomeric analog and also is a potential probe. L-Adenosine has weakly inhibitory adenosine deaminase (ADA) activity with an Ki value of 385 μM. L-Adenosine can be used for the research of adenosine uptake and accumulation[1].

  • CAS Number: 3080-29-3
  • MF: C10H13N5O4
  • MW: 267.24100
  • Catalog: Adenosine Deaminase
  • Density: 2.085 g/cm3
  • Boiling Point: 676.271ºC at 760 mmHg
  • Melting Point: 257.0-257.5ºC (0.4 H2O)
  • Flash Point: 362.796ºC

Amifostine trihydrate

Amifostine trihydrate (WR2721 trihydrate) is a broad-spectrum cytoprotective agent and a radioprotector. Amifostine trihydrate selectively protects normal tissues from damage caused by radiation and chemotherapy. Amifostine trihydrate is potent hypoxia-inducible factor-α1 (HIF-α1) and p53 inducer. Amifostine trihydrate protects cells from damage by scavenging oxygen-derived free radicals. Amifostine trihydrate reduces renal toxicity and has antiangiogenic action[1][2][3][4].

  • CAS Number: 112901-68-5
  • MF: C5H21N2O6PS
  • MW: 268.269
  • Catalog: MDM-2/p53
  • Density: 1.367g/cm3
  • Boiling Point: 441.7ºC at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 220.9ºC

Nitecapone

Nitecapone (OR-462) is an orally active and short-acting catechol-O-methyltransferase (COMT) inhibitor with gastroprotective and antioxidant properties. Nitecapone (OR-462) scavenges reactive oxygen and nitric radicals and prevents lipid peroxidation[1][2][3].

  • CAS Number: 116313-94-1
  • MF: C12H11NO6
  • MW: 265.21900
  • Catalog: COMT
  • Density: 1.451g/cm3
  • Boiling Point: 495.3ºC at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 211.6ºC

Doxofylline-d4

Doxofylline-d4 is the deuterium labeled Doxofylline. Doxofylline is an antagonist of adenosine A1 receptor which also inhibits phosphodiesterase IV[1][2].

  • CAS Number: 1346599-13-0
  • MF: C11H10D4N4O4
  • MW: 270.28
  • Catalog: Adenosine Receptor
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

CB30865

CB30865(ZM 242421) is a potent inhibitor of Nampt , an enzyme present in the NAD biosynthetic pathway. IC50 value:Target: NamptCancer cells develop dependence on Nampt due to increased energy requirements and the elevated activity of NAD consuming enzymes such as sirtuins and mono and poly(ADP-ribose) polymerases (PARPs). These findings suggest new chemical starting points for Nampt inhibitors and further implicate this enzyme as a target in cancer.

  • CAS Number: 206275-15-2
  • MF: C26H22BrN5O2
  • MW: 516.38900
  • Catalog: Nampt
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

JZP 430

JZP-430 is a potent, highly selective, irreversible inhibitor of α/β-hydrolase domain 6 (ABHD6) with an IC50 of 44 nM, exhibits ~230-fold selectivity over fatty acid amide hydrolase (FAAH) and lysosomal acid lipase (LAL)[1].

  • CAS Number: 1672691-74-5
  • MF: C16H26N4O3S
  • MW: 354.47
  • Catalog: MAGL
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Dronedarone-d6 (hydrochloride)

Dronedarone D6 hydrochloride is the deuterium labeled Dronedarone. Dronedarone hydrochloride, a derivative of Amiodarone (HY-14187), is a class III antiarrhythmic agent for the study of atrial fibrillation (AF) and atrial flutter. Dronedarone hydrochloride is a potent blocker of multiple ion currents, including potassium current, sodium current, and L-type calcium current, and exhibits antiadrenergic effects by noncompetitive binding to β-adrenergic receptors. Dronedarone hydrochloride is a substrate for and a moderate inhibitor of CYP3A4[1][2][3][4].

  • CAS Number: 1329809-23-5
  • MF: C31H39D6ClN2O5S
  • MW: 599.254
  • Catalog: Autophagy
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

GW6340

GW6340 is an intestinal-specific LXR agonist. GW6340 promotes macrophage reverse cholesterol transport (mRCT)[1].

  • CAS Number: 405910-78-3
  • MF: C33H32ClF3N2O2
  • MW: 581.07
  • Catalog: LXR
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Furamidine dihydrochloride

Furamidine dihydrochloride (DB75 dihydrochloride) is a selective protein arginine methyltransferase 1 (PRMT1) inhibitor with an IC50 of 9.4 μM. Furamidine dihydrochloride is selective for PRMT1 over PRMT5, PRMT6, and PRMT4 (CARM1) (IC50s of 166 µM, 283 µM, and >400 µM, respectively). Furamidine dihydrochloride is a potent, reversible and competitive tyrosyl-DNA phosphodiesterase 1 (TDP-1) inhibitor. Inhibition of TDP-1 by Furamidine dihydrochloride is effective both with single- and double-stranded DNA substrates but is slightly stronger with the duplex DNA. Furamidine dihydrochloride is also an antiparasite agent[1][2][3].

  • CAS Number: 55368-40-6
  • MF: C18H17ClN4O
  • MW: 340.80700
  • Catalog: Histone Methyltransferase
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

LY 3000328

LY 3000328 is a potent and selective Cathepsin S (Cat S) inhibitor with IC50s of 7.7 and 1.67 nM for hCat S and mCat S, respectively.

  • CAS Number: 1373215-15-6
  • MF: C25H29FN4O5
  • MW: 484.520
  • Catalog: Cathepsin
  • Density: 1.4±0.1 g/cm3
  • Boiling Point: 701.6±60.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 378.1±32.9 °C

CYP4A11/CYP4F2-IN-2

CYP4A11/CYP4F2-IN-2 (compound 15) is an orally available inhibitor of CYP4A11/4F2 with IC50s of 120 nM and 220 nM, respectively. CYP4A11/CYP4F2-IN-2 inhibits 20-HETE production in rat kidney and has potential inhibitory effects on diabetic nephropathy and autosomal dominant polycystic kidney disease[1].

  • CAS Number: 2280834-99-1
  • MF: C19H27N3O4
  • MW: 361.44
  • Catalog: Cytochrome P450
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

K-80001

K-80001 is an RXRα-binder and COX-1/2 inhibitor, with IC50s of with an IC50 of 82.9μM, 3.4μM, 1.2μM for RXRα, COX-1 and COX-2, respectively[1].

  • CAS Number: 242800-40-4
  • MF: C20H17FO2
  • MW: 308.35
  • Catalog: COX
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

SPHINGOMYELINASE

Sphingomyelin phosphodiesterase, a hydrolase, is involved in the sphingomyelin metabolism process. Sphingomyelin phosphodiesterase hydrolyzes the conversion of sphingomyelin to phosphocholine and ceramide. Sphingomyelin phosphodiesterase also plays an important role in cellular differentiation, various immune and inflammatory responses, and intracellular cholesterol trafficking and metabolism[1][2].

  • CAS Number: 9031-54-3
  • MF:
  • MW:
  • Catalog: Phospholipase
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Cysteine protease inhibitor-2

Cysteine protease inhibitor-2 is a cysteine protease inhibitor extracted from patent US20070032499A1, compound 12. Cysteine protease inhibitor-2 inhibits the cells growth of DCT116 and PC3 cells with GI50 values of 6.5 μM and 4.4 μM, respectively[1].

  • CAS Number: 612048-23-4
  • MF: C13H5N5O
  • MW: 247.212
  • Catalog: Cathepsin
  • Density: 1.5±0.1 g/cm3
  • Boiling Point: 597.2±50.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 315.0±30.1 °C

Suc-Ala-Pro-Ala-AMC

Suc-Ala-Pro-Ala-AMC is a tripeptide substrate of elastase[1].

  • CAS Number: 88467-44-1
  • MF: C25H30N4O8
  • MW: 514.52800
  • Catalog: Elastase
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

GanoMycin I

Ganomycin I is a dual inhibitor of α-Glucosidase and HMG-CoA reductase. Ganomycin I can also inhibits HIV protease. Ganomycin I exhibits anti-diabetic and anti-osteoclastogenesis effects[1][2].

  • CAS Number: 1191255-15-8
  • MF: C21H26O4
  • MW: 342.43
  • Catalog: HIV Protease
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Xanthine oxidase-IN-4

Xanthine oxidase-IN-4 (compound 19a) is an orally active and potent xanthine oxidase (XO) inhibitor, with an IC50 of 0.039 μM. Xanthine oxidase-IN-4 exhibits hypouricemic potency in potassium oxonate induced hyperuricemia rats. Xanthine oxidase-IN-4 can be used for hyperuricemia and gout research[1].

  • CAS Number: 2642137-96-8
  • MF: C15H13N5O2
  • MW: 295.30
  • Catalog: Xanthine Oxidase
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Salvianolic acid C

Salvianolic acid C is a noncompetitive Cytochrome P4502C8 (CYP2C8) inhibitor and a moderate mixed inhibitor of Cytochrome P45022J2 (CYP2J2), with Kis of 4.82 μM and 5.75 μM for CYP2C8 and CYP2J2, respectively.

  • CAS Number: 115841-09-3
  • MF: C26H20O10
  • MW: 492.431
  • Catalog: Cytochrome P450
  • Density: 1.6±0.1 g/cm3
  • Boiling Point: 844.2±65.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 464.4±34.3 °C

Eplerenone

Eplerenone is an aldosterone antagonist with an IC50 of 0.36 μM.Target: Mineralocorticoid ReceptorEplerenone is a selective mineralocorticoid receptor antagonist, which has been shown to produce sustained increases in plasma renin and serum aldosterone, consistent with inhibition of the negative regulatory feedback of aldosterone on renin secretion. The resulting increased plasma renin activity and aldosterone circulating levels do not overcome the effects of eplerenone. Eplerenone selectively binds to recombinant human mineralocorticoid receptors relative to its binding to recombinant human glucocorticoid, progesterone and androgen receptors [1]. Benefits of eplerenone therapy over placebo were also observed in several secondary outcomes, including: death from any cause or hospitalization for HF; death from any cause; hospitalization for any reason; or hospitalization for HF [2].

  • CAS Number: 107724-20-9
  • MF: C24H30O6
  • MW: 414.491
  • Catalog: Mineralocorticoid Receptor
  • Density: 1.3±0.1 g/cm3
  • Boiling Point: 597.9±50.0 °C at 760 mmHg
  • Melting Point: 241-243ºC
  • Flash Point: 259.5±30.2 °C

H-Arg-Val-Leu-psi(CH2NH)Phe-Glu-Ala-Nle-NH2

HIV-IN petide is a competitive inhibitor of HIV-1 protease (Ki=50 nM)[1].

  • CAS Number: 167875-35-6
  • MF: C40H69N11O8
  • MW: 832.04
  • Catalog: HIV
  • Density: 1.30g/cm3
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

CI-1044

CI-1044 is an orally active PDE4 inhibitor with IC50s of 0.29, 0.08, 0.56, 0.09 μM for PDE4A5, PDE4B2, PDE4C2 and PDE4D3, respectively.

  • CAS Number: 197894-84-1
  • MF: C23H19N5O2
  • MW: 397.429
  • Catalog: Phosphodiesterase (PDE)
  • Density: 1.4±0.1 g/cm3
  • Boiling Point: 773.2±60.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 421.4±32.9 °C

PF-06815345

PF-06815345 (PF 6815345) is a potent prodrug PCSK9 modulator that inhibits PCSK9 secretion in vitro translation assay; PF-06815345is identified after optimization of the prodrug moiety to maximize intestinal stability achieving liver targeting of the active compound after prodrug turnover by carboxylesterase (CES1). Hypercholesterolemia Phase 1 Discontinued

  • CAS Number: 1900686-46-5
  • MF: C27H29ClFN9O4
  • MW: 598.029
  • Catalog: Ser/Thr Protease
  • Density: 1.5±0.1 g/cm3
  • Boiling Point: 775.4±70.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 422.7±35.7 °C

2,5-Dihydroxycinnamic Acid phenethyl ester

5-LOX-IN-2, an inhibitor of 5-lipoxygenase (5-LOX) with an IC50 of 0.33 μM, inhibits 5-LOX in a dose-dependent manner . 5-LOX-IN-2, reduces the cell viability of renal cancer cells and induces apoptosis, can be used for cancer research[1].

  • CAS Number: 179691-97-5
  • MF: C17H16O4
  • MW: 284.31
  • Catalog: 5-Lipoxygenase
  • Density: 1.3±0.1 g/cm3
  • Boiling Point: 515.5±50.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 192.2±23.6 °C

Toddacoumalone

Toddacoumalone is a natural inhibitor of phosphodiesterase 4 (PDE4) with moderate potency and imperfect drug-like properties. Toddacoumalone has the potential for the research of inflammatory diseases such as psoriasis[1].

  • CAS Number: 139750-79-1
  • MF: C31H31NO6
  • MW: 513.58
  • Catalog: Phosphodiesterase (PDE)
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

MG-262

MG-262 is a reversible proteasome inhibitor with diverse biological activities[1][2][3].

  • CAS Number: 179324-22-2
  • MF: C25H42BN3O6
  • MW: 491.42800
  • Catalog: Proteasome
  • Density: N/A
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

Quinine bisulfate

Quinidine is an antiarrhythmic agent. Quinidine is a potent, orally active, selective cytochrome P450db inhibitor. Quinidine is also a K+ channel blocker with an IC50 of 19.9 μM. Quinidine can be used for malaria research[1][2][3].

  • CAS Number: 549-56-4
  • MF: C40H50N4O8S
  • MW: 746.91200
  • Catalog: Potassium Channel
  • Density: N/A
  • Boiling Point: 1136.7ºC at 760mmHg
  • Melting Point: N/A
  • Flash Point: 641.2ºC

Simeprevir

Simeprevir is a potent HCV NS3/4A protease inhibitor which suppresses HCV replication with EC50 of 8 nM.

  • CAS Number: 923604-59-5
  • MF: C38H47N5O7S2
  • MW: 749.939
  • Catalog: HCV
  • Density: 1.4±0.1 g/cm3
  • Boiling Point: N/A
  • Melting Point: N/A
  • Flash Point: N/A

HMB-Val-Ser-Leu-VE

HMB-Val-Ser-Leu-VE is a prototype vinyl ester inhibitor. HMB-Val-Ser-Leu-VE is against trypsin-like (T-L) proteasome activity with an IC50 of 0.033 μM[1].

  • CAS Number: 862891-04-1
  • MF: C26H39N3O7
  • MW: 505.60
  • Catalog: Ser/Thr Protease
  • Density: 1.2±0.1 g/cm3
  • Boiling Point: 754.1±60.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 409.8±32.9 °C

HIF-2α-IN-1

HIF-2α-IN-1 is a HIF-2α inhibitor has an IC50 of less than 500 nM in HIF-2α scintillation proximity assay.IC50 value: < 500 nMTarget: HIF-2α

  • CAS Number: 1799948-06-3
  • MF: C16H8F5NO4S
  • MW: 405.296
  • Catalog: HIF/HIF Prolyl-Hydroxylase
  • Density: 1.7±0.1 g/cm3
  • Boiling Point: 499.8±45.0 °C at 760 mmHg
  • Melting Point: N/A
  • Flash Point: 256.1±28.7 °C