Nucleic Acids Research 2015-05-19

BLM unfolds G-quadruplexes in different structural environments through different mechanisms.

Wen-Qiang Wu, Xi-Miao Hou, Ming Li, Shuo-Xing Dou, Xu-Guang Xi

Index: Nucleic Acids Res. 43 , 4614-26, (2015)

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Abstract

Mutations in the RecQ DNA helicase gene BLM give rise to Bloom's syndrome, which is a rare autosomal recessive disorder characterized by genetic instability and cancer predisposition. BLM helicase is highly active in binding and unwinding G-quadruplexes (G4s), which are physiological targets for BLM, as revealed by genome-wide characterizations of gene expression of cells from BS patients. With smFRET assays, we studied the molecular mechanism of BLM-catalyzed G4 unfolding and showed that ATP is required for G4 unfolding. Surprisingly, depending on the molecular environments of G4, BLM unfolds G4 through different mechanisms: unfolding G4 harboring a 3'-ssDNA tail in three discrete steps with unidirectional translocation, and unfolding G4 connected to dsDNA by ssDNA in a repetitive manner in which BLM remains anchored at the ss/dsDNA junction, and G4 was unfolded by reeling in ssDNA. This indicates that one BLM molecule may unfold G4s in different molecular environments through different mechanisms. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.