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896348-75-7 靶点实验数据

HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: IP6K1-p1
Protocol: PROTOCOL TABLE
SEQUENCE No. (e.g., 1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE and DESCRIPTION.

1. Reagent, 3 uL of 1.3 mM ATP and 130 uM IP6 mixture in assay buffer was dispensed to a white, 1536-well assay plate.
2. Compound, 23 nL of compounds of the top two doses (57.5 uM and 19.1 uM final concentration) of the libraries were dispensed into the mixture using the Kalypsis pintool.
3. Reagent, 1 uL of 2.4 uM IP6K1 was dispensed to the assay plates.
4. Incubation, 2 hr incubation at room temperature.
5. Reagent, 2 uL of ADP-Glo reagent was added to the wells.
6. Incubation, 1 hr incubation at room temperature.
7. Reagent, 4 uL or ADP-Glo substate was added to the wells.
8. Incubation, 45 min incubation at room temperature.
9. Detection, luminescence signal was detected using the ViewLux microplate imager (PerkinElmer).
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Majority of the compounds were tested at 58uM and 11uM. Percent inhibition at 58uM (Max_Response) was obtained and used for compound ranking.
2. For all inactive compounds, with Max_Response >= -25.00, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds (Max_Response < -25.00, more than 25% inhibition) a score range was given between 25 and 100. The activity score is based on the absolute value of the Max_Response.
PhenotypeAnalysis CommentActivity_ScoreMax_ResponseActivity at 0.029 uMActivity at 0.115 uMActivity at 0.144 uMActivity at 0.230 uMActivity at 0.575 uMActivity at 1.257 uMActivity at 2.059 uMActivity at 2.870 uMActivity at 3.790 uMActivity at 5.750 uMActivity at 7.911 uMActivity at 11.54 uMActivity at 17.22 uMActivity at 25.95 uMActivity at 38.35 uMActivity at 57.50 uMActivity at 85.10 uMActivity at 115.2 uMActivity at 153.0 uMActivity at 245.0 uMActivity at 288.0 uMCompound QC
Inactive0-0.963.5361-0.96QC'd by Chemdiv
Inactive0-0.9559-3.6852-0.9559QC'd by Chemdiv
Inactive0-0.9553-5.7534-0.9553QC'd by Chemdiv
Inactive0-0.9545-5.6084-0.9545QC'd by ChemRoutes
Inactive0-0.953-2.3216-0.953QC'd by Sytravon
Inactive0-0.94922.2186-0.9492QC'd by Edelris
Inactive0-0.9486-1.2758-0.9486QC'd by Chemdiv
Inactive0-0.94674.4666-0.9467QC'd by ChemRoutes
Inactive0-0.9436-8.9932-0.9436QC'd by Chemdiv
Inactive0-0.9422-1.7826-0.9422QC'd by Analyticon
Inactive0-0.9415.2115-0.941QC'd by Chemdiv
Inactive0-0.93984.3972-0.9398QC'd by Sytravon
Inactive0-0.93624.3836-0.9362QC'd by Chemdiv
Inactive0-0.92992.8643-0.9299QC'd by Sytravon
Inactive0-0.92934.8772-0.9293QC'd by Chemdiv
Inactive0-0.9286-10.0521-0.9286QC'd by Chemdiv
Inactive0-0.9253-2.1742-0.9253QC'd by Sytravon
Inactive0-0.92040.4163-0.9204QC'd by Edelris
Inactive0-0.9193-0.0183-0.9193QC'd by Analyticon
Inactive0-0.9182-0.8109-0.9182QC'd by Analyticon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:ICCB-Longwood/NSRB Screening Facility, Harvard Medical School 靶标:N/A
External ID: HMS704
Protocol: Prior to screening, a wildtype strain of S. aureus RN4220 was freshly transformed with the plasmid pMS182 encoding constitutively expressed GFP and a DeltatarO strain of RN4220 was transformed with the plasmid pMS183 encoding constitutively expressed mCherry. Following transformation, both plasmids were maintained with chloramphenicol (Cm) at a concentration of 10 micrograms/mL. The day before screening, both strains were grown overnight (~24 h) in sterile-filtered tryptic soy broth (TSB) with 10 micrograms/mL chloramphenicol at 30 degrees C with shaking.

On the day of screening, columns 1-23 of assay plates (Corning 3710) were prefilled with 40 uL of TSB. Next, 300 nL of each compound were pin-transferred to each plate (final assay concentration of test compound was 18.75 micrograms/mL). For every compound library plate, there were four daughter plates (A & B containing mCherry-labeled DeltatarO and C & D containing GFP-labeled wild type). To equilibrate the number of cells, the overnight cultures of RN4220 and RN4220 DeltatarO were diluted to an OD600 = 2 and then diluted 1000x into TSB (Cm 10). 40 uL of the diluted cultures were added to columns 1-22 of the corresponding assay plates. Wells in column 23 contained only medium and served as the negative controls. Column 24 was filled with the positive control (erythromycin at 20 micrograms/mL). Final assay well volume was 80 uL. Plates were stacked 5 high, covered with lids (Corning 3009), and incubated at 30 degrees C overnight (~18 h).

The following day, assay plates were read using a PerkinElmer EnVision (600 nm filter).
Comment: OD600 values were normalized to the positive and negative controls to determine a normalized percent survival. Based on the normalized OD600 values, a substance was considered active with >50% survival for the DeltatarO strain (activity outcome = 1 for assay 2) and <10% survival for the wild type strain (activity outcome = 2 for assay 1). Activity scores were calculated using average % survival for each strain. Average % survival <= 0 was scored as 100 for activity; average % survival >= 100 was scored as 0 for activity. Average % survival between 0 and 100 was subtracted from 100 to generate activity scores for intermediate values (i.e. average % survival = 40 corresponds to an activity score of 60).

Note that since this is treated as a panel assay, the query for active compounds includes many that were considered active only for the DeltatarO mutant strain or for both strains. The final activity outcome (reduced survival for the wild type strain only) is a small subset of this list, based on activity against the wild type strain but not against the DeltatarO mutant strain.
Inhibit teichoic acid synthesis (OD600_A)Inhibit teichoic acid synthesis (OD600_B)Inhibit teichoic acid synthesis (% Survival_A)Inhibit teichoic acid synthesis (% Survival_B)Inhibit teichoic acid synthesis (% Survival_Avg)ScorePanel IDPanel Name
0.1750.164556258422DeltatarO mutant
0.0970.16-173171Wild type
0.1560.124453339612DeltatarO mutant
0.2810.3097984811Wild type
0.1750.134554047532DeltatarO mutant
0.2360.2545664601Wild type
0.1740.158545856442DeltatarO mutant
0.2480.2836275681Wild type
0.2010.159685863372DeltatarO mutant
0.2810.3127985821Wild type
0.2250.199808884162DeltatarO mutant
0.2450.2776072661Wild type
0.1580.138464345552DeltatarO mutant
0.2970.3118784861Wild type
0.1680.122513141592DeltatarO mutant
0.2550.2696570681Wild type
0.1690.148525051492DeltatarO mutant
0.2510.2676369661Wild type
0.1840.165596361392DeltatarO mutant
0.2810.3157986821Wild type
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: SNCA-p-activity-luciferase
Protocol: PROTOCOL TABLE
SEQUENCE No. (e.g., 1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE; DESCRIPTION

1; Cells; 4 uL; Dispense 1500 HEK-293-SNCA-luc cells/well into Greiner 1536-well white / solid bottom tissue culture treated plate. The plate was covered with metal lids with gas-exchange holes.
2; Incubate; 24 hours; Incubate at 37C, 5% CO2, 95% RH.
3; Compounds; 23 nL; Compounds and controls were transferred via a Kalypsys Pin Tool (Wako USA) equipped with a 1536-slotted pin array. The plate was covered with metal lids with gas-exchange holes.
4; Incubate; 24 hours; Incubate at 37C, 5% CO2, 95% RH.
5; Dispense; 1 uL; Dispense Gly-Phe-7-amino-4-trifluoromethylcoumarin (GF-AFC, prepared at 125 uM in PBS) was added. The plate was covered with metal lids with gas-exchange holes.
6; Incubate; 30 min; Incubate at 37C, 5% CO2.
7; Detector; Fluorescence; Measure fluorescence with ViewLux microplate reader (PerkinElmer) equipped with 405/10 excitation and 540/25 emission filters.
8; Dispense; 3 uL; Dispense ONE-Glo (PerkinElmer) lucifase detection reagent was added to each well. Plates were covered with metal lids with gas-exchange holes.
9; Incubate; 15 min; Incubate at room temperature.
10; Detector; Luminescence; Measure luminescence with ViewLux microplate reader (PerkinElmer) equipped with clear filters.

NOTES (numbers refer to sequence above)
1; HEK-293-SNCA-luc were cultured and suspended in phenol-red free DMEM (4.5 g/L glucose, 25 mM HEPES, cat #21063 (Thermo)).
3; Compounds were added to the assay plate in an 11-point intra plate dose response, 1:3 titration in DMSO with a final concentration range of xxx - yyy uM. Vehicle-only plates, with DMSO being pin-transferred to every well, were inserted at the beginning of screening runs to confirm expected assay performance. Activity was normalized to wells containing medium only (-100% activity, full inhibition) and SNCA-luc cells treated with DMSO vehicle control (0% activity), contained on the same plate as test samples.
10; Signals were analyzed, and dose-response curves were fit using the Hill equation. Compounds in curve classes -1.1, -1.2, -2.1, -2.2 in the SNCA-luc assay were considered active. Compounds were eliminated from further consideration if also active (curve class -1.1, -1.2, -1.3, -1.4, -2.1, -2.2, -2.3, -2.4) in the GF-AFC cytotoxicity assay.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0000386857 uMActivity at 0.0001060182 uMActivity at 0.0001896372 uMActivity at 0.0004510146 uMActivity at 0.0007501981 uMActivity at 0.0009728036 uMActivity at 0.00288 uMActivity at 0.00508 uMActivity at 0.00871 uMActivity at 0.015 uMActivity at 0.026 uMActivity at 0.053 uMActivity at 0.079 uMActivity at 0.232 uMActivity at 0.457 uMActivity at 0.692 uMActivity at 1.068 uMActivity at 2.292 uMActivity at 3.859 uMActivity at 11.39 uMActivity at 17.02 uMActivity at 25.62 uMActivity at 57.25 uMActivity at 87.55 uMActivity at 183.4 uMActivity at 286.0 uMCompound QC
Inactive0-6.754.95490.97270.090117.540 0 0 18.940815.9527-1.59161.49698.9408QC'd by Sytravon
Inactive0-5.34.0950.99965.5-7.782340 0 0 1-11.1081-7.5736-7.73535.034-11.1081QC'd by Sytravon
Inactive0-5.154.95490.907-15.92079.540 0 0 117.87255.287413.9021-13.683917.8725QC'd by Sytravon
Activator35.481346.40950Single point of activity-4.452.5884145.9404-0.469131 0 0 035.59340.1678-0.39091.93335.593QC'd by Sytravon
Activator39.810772.26460Single point of activity-4.44.95490.951568.1912-4.073330 0 0 058.01175.8738-9.2278-8.522458.0117QC'd by Sytravon
Activator14.125445.33190Partial curve; partial efficacy; poor fit-4.852.40640.998240.7728-4.55912.41 0 0 040.0933-24.9557-3.884511.525440.0933QC'd by Sytravon
Inactive0-5.754.95490.9291-20.608633.154541 0 0 0-12.846445.456928.2161-28.42-12.8464QC'd by Sytravon
Inactive0-4.354.95490.855-24.2184-0.540 0 0 0-18.932-3.6477-2.4094.988-18.932QC'd by Sytravon
Inactive0-4.73.62720.862515-8.552340 0 0 014.477-2.951-13.7936-5.964614.477QC'd by Sytravon
Inactive0-6.74.95490.66373-16.86440 0 0 08.8169-15.726.3794-6.35998.8169QC'd by Sytravon
Inactive0-4.752.40640.999921.5-2.410141 0 0 020.218433.3778-2.42513.577120.2184QC'd by Sytravon
Inactive0-4.44.95490.81172.5-8.34540 0 0 01.096-8.966-5.5054-11.12091.096QC'd by Sytravon
Activator39.810738.79450Single point of activity-4.44.95490.624141.75572.961230 0 0 036.203921.355-6.3904-4.532536.2039QC'd by Sytravon
Inactive0-6.054.0950.9994-6.05182040 0 0 120.515619.73771.4122-6.293220.5156QC'd by Sytravon
Inactive0-5.24.095110.5-10.168341 0 0 1-15.988436.1362-10.14028.7939-15.9884QC'd by Sytravon
Inactive0-6.51.39050.9999-24.2410.274540 0 0 1-5.5981-4.3546-20.7587-23.9509-5.5981QC'd by Sytravon
Inactive0-6.84.95490.711-2.44592140 0 0 0-3.345317.3219-9.95495.5495-3.3453QC'd by Sytravon
Activator39.810747.8090Partial curve; partial efficacy; poor fit-4.44.95490.521250.23992.43092.40 0 0 043.472230.2363-10.9855-11.514343.4722QC'd by Sytravon
Activator22.387275.50810Partial curve; high efficacy; poor fit-4.651.96730.982996.532421.02432.30 0 0 086.498526.093216.336536.261386.4985QC'd by Sytravon
Inactive0-6.84.95490.7429-1-13.073840 0 0 01.8063-11.31150.8702-5.17571.8063QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: huntington-HTTAS8-p1-FF-overN
Protocol: PROTOCOL TABLES
SEQUENCE No. (1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE and DESCRIPTION.
1; Reagent; 4 uL; 2,500 Hek293 luciferase reporter cells per wells
2; Time; 24 hour; 37C, 5% CO2
3; Compound; 23 nL; Control inhibitor / compound library
4; Time; 24 hour; 37C, 5% CO2
5; Reagent; 2.5 uL; Firefly Luc reagent; Dual-Glo Luciferase Reporter Assay System (Promega)
6; Time; 10 min; room temperature incubation
7; Detection; Luminescence; FLuc

NOTES (numbers refer to sequence above)
1; High-throughput screening, measuring luminescence from a Hek293 luciferase reporter, was performed in 1,536 well white-walled tissue-culture treated plates. 2,500 cells were plated in 4 muL of Opti-MEM per well using a Multidrop Combi Reagent Dispenser (ThermoFisher).
2; Assay plates were cultured for 24 hours.
3; Control inhibitor (PTC124; final concentration of 50 uM) and compound library (at final concentrations of 460 nM - 57.5 uM) were added to the assay plate using the Kalypsis Pintool Robotic System equipped with 1536 pinheads.
4; Cells were then incubated for 24 hours at 37 degrees C prior to luminescence measurements.
5; In all cases, luminescence was measured using the Dual-Glo Luciferase Reporter Assay System (Promega) following the manufacturer's instructions.
6; Room temperature incubation.
7; Luminescence signal was obtained using the PerkinElmer ViewLux plate reader. Results were normalized to vehicle control (0% activity) and zero RLU (-100% activity).
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent activators are ranked higher than compounds that showed apparent inhibition.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = 1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 1.2 || ratio.curve_class == 2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds also have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentFF-overN-Activity_ScoreFF-overN-Curve_DescriptionFF-overN-Fit_LogAC50FF-overN-Fit_HillSlopeFF-overN-Fit_R2FF-overN-Fit_InfiniteActivityFF-overN-Fit_ZeroActivityFF-overN-Fit_CurveClassFF-overN-Excluded_PointsFF-overN-Max_ResponseFF-overN-Activity at 0.0000389080 uMFF-overN-Activity at 0.0001066275 uMFF-overN-Activity at 0.0001907270 uMFF-overN-Activity at 0.0004536066 uMFF-overN-Activity at 0.0007545096 uMFF-overN-Activity at 0.0009786459 uMFF-overN-Activity at 0.00290 uMFF-overN-Activity at 0.00503 uMFF-overN-Activity at 0.00876 uMFF-overN-Activity at 0.015 uMFF-overN-Activity at 0.026 uMFF-overN-Activity at 0.052 uMFF-overN-Activity at 0.080 uMFF-overN-Activity at 0.235 uMFF-overN-Activity at 0.459 uMFF-overN-Activity at 0.740 uMFF-overN-Activity at 1.165 uMFF-overN-Activity at 2.228 uMFF-overN-Activity at 5.999 uMFF-overN-Activity at 11.47 uMFF-overN-Activity at 19.13 uMFF-overN-Activity at 25.10 uMFF-overN-Activity at 57.49 uMFF-overN-Activity at 115.7 uMFF-overN-Activity at 221.8 uMFF-overN-Activity at 288.0 uMCompound QC
Inactive0004-8.5233-2.8988-12.5908-2.7412-8.5233QC'd by Sytravon
Inactive0-5.34.95490.5242-0.0894-10.926540 0 0 0-0.0745-3.5393-17.8554-0.1186-0.0745QC'd by Sytravon
Inactive0004-2.5515-1.0417-4.89670.166-2.5515QC'd by Sytravon
Inactive0-5.252.63840.99936-4.427940 0 0 05.847-4.5232-4.1214.75475.847QC'd by Sytravon
Inactive00040.20430.5279-0.6989-3.01060.2043QC'd by Sytravon
Inactive0004-20.4584-16.0227-10.542-12.7-20.4584QC'd by Sytravon
Inactive00040.38111.93282.01373.54250.3811QC'd by Sytravon
Inactive0-4.61.86170.9679-30.78-11.312340 0 0 0-27.3167-13.1248-9.8436-15.1075-27.3167QC'd by Sytravon
Inactive0-4.651.88510.9245-20.4108-4.652640 0 0 0-18.259-6.997-2.6272-8.4549-18.259QC'd by Sytravon
Inactive00047.074912.07649.436310.99557.0749QC'd by Sytravon
Inactive0-4.652.33320.9933-31.579-4.453840 0 0 0-28.8158-5.5887-3.2948-9.4116-28.8158QC'd by Sytravon
Inactive00042.86354.45163.82067.19372.8635QC'd by Sytravon
Inactive0-5.651.75290.99993.5-15.00740 0 0 1-13.3605-15.0059-10.57742.4893-13.3605QC'd by Sytravon
Inactive0-4.71.96730.9934-42.2319-13.804440 0 0 0-38.812-14.9413-12.7536-21.2969-38.812QC'd by Sytravon
Inactive0-4.93.1320.6223-3.5849-13.726140 0 0 0-3.8208-9.1712-18.1051-9.386-3.8208QC'd by Sytravon
Inactive0-5.450.40.82621.069-18.834640 0 0 0-2.4425-15.6955-9.0343-9.4911-2.4425QC'd by Sytravon
Inactive0-4.953.1320.77051.5-12.370740 0 0 01.5975-7.9378-16.9756-5.17381.5975QC'd by Sytravon
Inactive0-6.84.50450.3905-9.2851-1.574640 0 0 0-7.9625-2.9788-14.4042-5.0533-7.9625QC'd by Sytravon
Inactive0-4.44.95490.8608-22.7116-5.668440 0 0 0-20.1763-4.2865-9.9046-3.4737-20.1763QC'd by Sytravon
Inactive0-5.154.95490.56371-8.347840 0 0 1-11.1241-3.9652-12.78990.2253-11.1241QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:TDP1 protein [Homo sapiens]
External ID: TDP1100
Protocol: DT40-hTDP1 cells without 20 nM Camptothecin (add 20 microL of DMSO in 1 L of cell culture medium) were dispensed at 400 cells/5microL/well in tissue culture treated 1536-well white wall/solid bottom assay plates (Greiner Bio-One North America, NC, U.S.A.) using a Multidrop Combi 8 channel dispenser (Thermo Fisher, Waltham, MA, USA). 23 nL compounds and controls were transferred using the pin tool (Kalypsys, San Diego, CA, USA) to the assay plates. The assay plates were then incubated at 37 masculineC for a minimum 48 hr. Three microL of Cell Titer Glo solution was added to the plates and incubated at RT in dark for 30 min. Luminescence was read using ViewLux (Perkin Elmer) with 1 sec exposure slow speed, high gain and 2x binning.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0000295000 uMActivity at 0.0000590000 uMActivity at 0.0001503265 uMActivity at 0.0002712146 uMActivity at 0.0005895491 uMActivity at 0.00117 uMActivity at 0.00179 uMActivity at 0.00299 uMActivity at 0.00672 uMActivity at 0.014 uMActivity at 0.026 uMActivity at 0.040 uMActivity at 0.074 uMActivity at 0.167 uMActivity at 0.363 uMActivity at 0.628 uMActivity at 0.975 uMActivity at 1.849 uMActivity at 4.119 uMActivity at 9.037 uMActivity at 15.83 uMActivity at 21.08 uMActivity at 46.23 uMActivity at 92.54 uMActivity at 165.6 uMCompound QC
Inactive04-3.0662-2.41261.9741-4.0617-0.6298-3.0662QC'd by "Chem Div"
Inactive04.95490.7346-0.808-4.30840 0 0 0 0-0.431-4.3080.8987-1.5892-1.522-0.431QC'd by "Chem Div"
Inactive04.95490.6448-12.51274.558540 0 0 0 0-9.75096.55851.6006-0.810411.697-9.7509QC'd by "Chem Div"
Inhibitor18.356499.037841Partial curve; high efficacy-4.73622.84730.9985-99.5803-0.5425-2.10 0 0 0 0-92.8278-1.5772-1.93651.8258-13.1847-92.8278QC'd by "Chem Div"
Inhibitor29.092942.181510Single point of activity-4.53624.95490.9879-50.8391-8.6577-30 0 0 0 0-46.8496-7.6387-8.6142-11.6103-6.66-46.8496QC'd by "Chem Div"
Inhibitor18.3564123.871841Partial curve; high efficacy-4.73621.62590.9975-121.45782.414-2.10 0 0 0 0-98.82245.0098-1.1767-0.5372-27.2941-98.8224QC'd by "Chem Div"
Inhibitor14.581109.907342Partial curve; high efficacy-4.83621.82650.9637-106.40863.4987-2.10 0 0 0 0-94.670912.0352-9.70946.0901-28.9742-94.6709QC'd by "Chem Div"
Inactive00.30.9096-34.0578-3.769740 0 0 0 0-28.0098-7.7697-15.2699-21.1534-19.3019-28.0098QC'd by "Chem Div"
Inhibitor29.092990.897810Single point of activity-4.53624.44950.9936-90.33680.561-30 0 0 0 0-79.96355.0637-2.1732-1.69030.5114-79.9635QC'd by "Chem Div"
Inactive00.30.426615.2787-6.721340 0 0 0 010.4803-5.72138.5589-5.30466.71910.4803QC'd by "Chem Div"
Inactive01.96730.6089-9.50825.296840 0 0 0 0-7.95747.2968-1.890310.39461.3036-7.9574QC'd by "Chem Div"
Inhibitor16.360145.504710Single point of activity-4.78624.95490.9618-49.1256-3.6209-30 0 0 0 0-48.9315-7.5358-6.3332.7698-6.0371-48.9315QC'd by "Chem Div"
Inactive0-5.28620.80.9747-26.74278.437240 0 0 0 0-20.71279.43722.29650.248-14.6534-20.7127QC'd by "Chem Div"
Inactive04.95490.9526-10.392812.159440 0 0 0 0-10.30087.659413.806714.3816-9.7278-10.3008QC'd by "Chem Div"
Inactive02.25260.9456-15.0824-3.824740 0 0 0 0-14.7061-2.8247-5.6912-3.1226-9.4063-14.7061QC'd by "Chem Div"
Inhibitor12.995378.844742Partial curve; high efficacy-4.88621.55790.9935-82.5518-3.7072-2.10 0 0 0 0-72.8175-6.4603-0.3489-8.7793-32.8366-72.8175QC'd by "Chem Div"
Inhibitor18.356449.742410Single point of activity-4.73622.84730.9797-46.14163.6008-30 0 0 0 0-42.7679-0.89924.9836.9739-2.5062-42.7679QC'd by "Chem Div"
Inactive04.95490.8308-9.79910.472540 0 0 0 0-5.08718.47258.256110.070916.081-5.0871QC'd by "Chem Div"
Inactive01.88510.9722-5.76856.220540 0 0 0 0-5.0636.2205-1.5445-7.1037-5.5678-5.063QC'd by "Chem Div"
Inactive00.30.842-31.92493.17440 0 0 0 0-26.7418-0.826-13.6909-13.1344-14.0869-26.7418QC'd by "Chem Div"
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:67.9K protein [Vaccinia virus]
External ID: Vaccinia-p2mCherry
Protocol: A549 cells were plated at a concentration of approximately 6,000 cells per well in clear-bottom black-walled plates. Compounds were added to the assay plate followed by addition of virus (LREV) that expresses the Venus fluorescent protein early in viral ininfection. During the late viral infection, mCherry was also added to the plate at an MOI of 10 (~ 60,000 plaque forming units (PFU) of virus). Following virus addition, plates were incubated in a tissue-culture incubator for 12-18 hours. At increasing times postinfection, fluorescence from both Venus and mCherrry was determined using a plate-reader and standard conditions for observing Venus fluorescence (EX515/EM530) and mCherry fluorescence (EX587/EM610). In each plate, positive controls (virus infection in the presence of 1% DMSO only) and an inhibitory drug control (AraC at 500 nM) was included and used to normalize the data.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00111 uMActivity at 0.00284 uMActivity at 0.00446 uMActivity at 0.00891 uMActivity at 0.015 uMActivity at 0.029 uMActivity at 0.036 uMActivity at 0.073 uMActivity at 0.113 uMActivity at 0.149 uMActivity at 0.293 uMActivity at 0.487 uMActivity at 0.726 uMActivity at 1.458 uMActivity at 2.011 uMActivity at 3.331 uMActivity at 5.199 uMActivity at 7.343 uMActivity at 13.78 uMActivity at 20.90 uMActivity at 36.53 uMActivity at 60.71 uMActivity at 87.88 uMActivity at 127.3 uMActivity at 194.0 uMCompound QC
Inactive01.39870.9996-13.0836-0.585340 0 0 1-0.8016-2.9877-9.467-12.5697-0.8016QC'd by "Asinex Ltd."
Inhibitor12.589340.511110Single point of activity-4.94.50450.9991-45.3562-4.8451-30 0 0 0-45.0493-5.3378-3.9936-8.2693-45.0493QC'd by "Asinex Ltd."
Inactive040-2.0352000QC'd by "Asinex Ltd."
Inactive04000-0.99410QC'd by "Asinex Ltd."
Inactive04.954910-13.633540 0 0 00-12.1946000QC'd by "Asinex Ltd."
Inactive0400000QC'd by "Asinex Ltd."
Inactive04-13.3369-12.1444-5.0835-13.8274-13.3369QC'd by "Asinex Ltd."
Inactive040-4.5112-3.956800QC'd by "Asinex Ltd."
Inactive0400000QC'd by "Asinex Ltd."
Inactive01.80790.9998-19.4131.540 0 0 1-2.29920-11.3763-18.6775-2.2992QC'd by "Asinex Ltd."
Inactive04.95490.77214-15.639840 0 0 00-10.469-15.9421-20.94990QC'd by "Asinex Ltd."
Inactive04.95490.9987-20.1455-0.540 0 0 0-19.28790-0.8113-0.6866-19.2879QC'd by "Asinex Ltd."
Inactive04.95490.9999-7.3207040 0 0 0-6.934000-6.934QC'd by "Asinex Ltd."
Inactive04-10.13410-23.8022-3.1543-10.1341QC'd by "Asinex Ltd."
Inactive01.82650.9999-31.5926140 0 0 1-8.44790-12.323-29.2439-8.4479QC'd by "Asinex Ltd."
Inactive00.70.95422-18.098140 0 0 00-15.9151-9.0083-6.24390QC'd by "Asinex Ltd."
Inactive04.95490.79940.5884-8.240 0 0 0-1.1763-9.1365-5.7126-9.75-1.1763QC'd by "Asinex Ltd."
Inactive00.60.9653-16.23140.75640 0 0 0-14.3595-3.5367-8.6422-10.5182-14.3595QC'd by "Asinex Ltd."
Inactive04-3.3063-1.5829-0.45720-3.3063QC'd by "Asinex Ltd."
Inactive04.95490.7973-6.6878-1.540 0 0 10-2.54350-5.57310QC'd by "Asinex Ltd."
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:TDP1 protein [Homo sapiens]
External ID: TDP1101
Protocol: DT40-hTDP1 cells with 20 nM Camptothecin (add 20 microL of 1 mM CPT stock in 1 L of cell culture medium) were dispensed at 400 cells/5microL/well in tissue culture treated 1536-well white wall/solid bottom assay plates (Greiner Bio-One North America, NC, U.S.A.) using a Multidrop Combi 8 channel dispenser (Thermo Fisher, Waltham, MA, USA). 23 nL compounds and controls were transferred using the pin tool (Kalypsys, San Diego, CA, USA) to the assay plates. The assay plates were then incubated at 37 masculineC for a minimum 48 hr. Three microL of Cell Titer Glo solution was added to the plates and incubated at RT in dark for 30 min. Luminescence was read using ViewLux (Perkin Elmer) with 1 sec exposure slow speed, high gain and 2x binning.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0000295000 uMActivity at 0.0000590000 uMActivity at 0.0001503265 uMActivity at 0.0002712146 uMActivity at 0.0005895491 uMActivity at 0.00117 uMActivity at 0.00179 uMActivity at 0.00299 uMActivity at 0.00672 uMActivity at 0.014 uMActivity at 0.026 uMActivity at 0.040 uMActivity at 0.074 uMActivity at 0.167 uMActivity at 0.363 uMActivity at 0.628 uMActivity at 0.975 uMActivity at 1.849 uMActivity at 4.119 uMActivity at 9.037 uMActivity at 15.83 uMActivity at 21.08 uMActivity at 46.23 uMActivity at 92.54 uMActivity at 165.6 uMCompound QC
Inhibitor20.5962118.89141Partial curve; high efficacy-4.68622.30310.9994-116.16692.7241-2.10 0 0 0 0-99.94512.72414.25720.7717-13.7373-99.9451QC'd by "Asinex Ltd."
Inactive00.80.9749-16.17712.005740 0 0 0 0-13.14662.00571.2486-2.8352-5.7162-13.1466QC'd by "Asinex Ltd."
Inactive04.95490.6148-11.8012.205940 0 0 0 0-9.7999-4.79413.64526.73633.1419-9.7999QC'd by "Asinex Ltd."
Inactive0-5.03622.33320.9795-28.8852-5.272340 0 0 0 0-28.1997-7.2723-3.3531-4.7215-17.5124-28.1997QC'd by "Asinex Ltd."
Inhibitor5.173594.688584Complete curve; high efficacy-5.28622.90230.9917-96.1842-1.4957-1.10 0 0 0 0-96.0073-7.53084.5779-6.8491-81.1577-96.0073QC'd by "Asinex Ltd."
Inhibitor18.356494.01210Single point of activity-4.73623.62720.9999-96.5346-2.5226-30 0 0 0 0-93.107-2.9055-1.9361-2.363-9.7613-93.107QC'd by "Asinex Ltd."
Inactive04.95490.8434-31.3086-2.25540 0 0 0 0-27.0497-0.755-10.5210.92280.8125-27.0497QC'd by "Asinex Ltd."
Inactive04.44950.7303-25.728-7.249240 0 0 0 0-25.3982-8.7492-13.51280.9177-19.0413-25.3982QC'd by "Asinex Ltd."
Inhibitor20.5962100.541141Partial curve; high efficacy-4.68622.09370.998-104.3872-3.8461-2.10 0 0 0 0-88.9539-4.1551-2.0443-7.1093-18.8654-88.9539QC'd by "Asinex Ltd."
Inhibitor29.092991.413310Single point of activity-4.53624.95490.9947-88.35973.0536-30 0 0 0 0-79.845-1.16852.65594.53855.7131-79.845QC'd by "Asinex Ltd."
Inactive04.95490.786-1.849912.995440 0 0 0 116.19477.995418.22950.5262-1.875716.1947QC'd by "Asinex Ltd."
Inactive04.95490.9259-4.54544.383940 0 0 0 0-3.72395.38394.7472.6664.8335-3.7239QC'd by "Asinex Ltd."
Inactive0-6.23624.95490.9762-1.408619.454340 0 0 0 01.208619.454317.7088-3.3481-2.37561.2086QC'd by "Asinex Ltd."
Inactive04.95490.4363-4.5616-11.561640 0 0 0 0-4.5336-11.5616-1.6565-10.5162-2.2482-4.5336QC'd by "Asinex Ltd."
Inactive00.70.98896.5184-6.981640 0 0 0 02.8921-7.4816-5.7762-3.9537-1.52422.8921QC'd by "Asinex Ltd."
Inactive04.95490.5926-22.1394-0.155940 0 0 0 0-20.8088-4.1559-8.30412.2914-0.0696-20.8088QC'd by "Asinex Ltd."
Inhibitor29.092964.218610Single point of activity-4.53624.95490.9684-70.1227-5.9041-30 0 0 0 0-64.396-9.2052-0.418-11.9994-2.9068-64.396QC'd by "Asinex Ltd."
Inactive01.210.9644-26.92634.843740 0 0 0 0-17.96476.84374.96630.5719-1.9517-17.9647QC'd by "Asinex Ltd."
Inactive04.95490.9261-29.9871.936440 0 0 0 0-26.99980.4364-0.7582-0.45327.9656-26.9998QC'd by "Asinex Ltd."
Inactive04.0950.45761.780312.60740 0 0 0 06.613211.107-4.99860.1865.25796.6132QC'd by "Asinex Ltd."
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:ICCB-Longwood/NSRB Screening Facility, Harvard Medical School 靶标:
External ID: HMS979
Protocol: Cation-adjusted Mueller Hinton II broth supplemented with 0.005% Tween-80 was inoculated with a single colony of S. aureus RN4220. Following overnight incubation, the culture was diluted 1:100 into fresh medium, and incubation was continued until the bacterial suspension reached an optical density at 600 nm (OD600) of 0.6, corresponding to a bacterial density of 5 x 10E8 colony forming units (CFU)/mL. An aliquot of this culture was diluted 1:400 with fresh medium and stored on ice until use. Assay plates were prepared for compound transfer in quadruplicate to enable screening of compounds at two temperatures in duplicate. The plate layout was as follows: wells in columns 1-22 were loaded with culture medium at 25 microL/well; wells in column 23 contained the screening negative control (medium only); wells in column 24 contained the screening positive control (medium containing 25 microg/mL chloramphenicol). 300 nL of experimental compounds were transferred by stainless steel pin array from library plate to assay plates.

25 microL of the bacterial suspension was added to each assay well. Assay plates were incubated at 42 degrees C in humidified chambers (humidity > 85%). After 20 h, the OD600 was measured using a plate reader in absorbance mode.
Comment: Data analysis description:

Absorbance values at 42 degrees C and 30 degrees C for each replicate were normalized to positive and negative control plate average absorbance, and replicate normalized values were averaged to calculate an average relative absorbance at both temperatures. A substance was considered a temperature-dependent positive at 42 degrees C if average relative absorbance <= 50 and the difference between relative absorbance at 30 degrees C and 42 degrees C >= 20 (relative absorbance 30 degrees C - relative absorbance 42 degrees C >= 20). A substance was considered a temperature-independent positive if relative absorbance at both 30 degrees C and 42 degrees C < 10.

Activity scores were calculated using average relative absorbance at both temperatures. Average relative absorbance <= 0 was scored as 100 for activity; average relative absorbance >= 100 was scored as 0 for activityy. Average relative absorbance between 0 and 100 was subtracted from 100 to generate activity scores for intermediate values (i.e. average relative absorbance = 40 corresponds to an activity score of 60).

Note that since this is treated as a panel assay, the query for active compounds includes many that were considered active at both temperatures. The final Pubchem activity score is the activity score at 42 degrees C, and compounds scored as active (PUBCHEM_ACTIVITY_OUTCOME = 2) include both temperature-dependent and temperature-independent active substances.
Absorbance_42C_AAbsorbance_42C_BRel_Abs_42C_ARel_Abs_42C_BAvg_Rel_Abs_42CAbsorbance_30C_AAbsorbance_30C_BRel_Abs_30C_ARel_Abs_30C_BAvg_Rel_Abs_30C(Abs_30C)-(Abs_42C)Activity Score_30CActivity Outcome_TempDepActivity Outcome_TempIndActivity Type
0.3580.40898.28110.75104.520.6440.645107.98104.06106.021.50II
0.350.38695.78104.1199.950.6470.643108.52103.71106.126.170II
0.370.401102.03108.64105.330.6160.645102.96104.06103.51-1.830II
0.3660.403100.78109.24105.010.6140.578102.692.4997.55-7.472II
0.3670.387101.09104.41102.750.5790.62396.32100.2698.29-4.462II
0.350.38395.78103.2199.50.690.616116.2499.05107.648.150II
0.3610.36899.2298.6898.950.6020.583100.4593.3596.9-2.053II
0.3390.39592.35106.8399.590.5780.64896.14104.58100.360.770II
0.3630.35299.8493.8596.850.5840.60197.2296.4696.84-0.013II
0.360.35898.9195.6697.280.6670.616112.1199.05105.588.30II
0.2340.37659.56101.0980.330.590.6598.3104.92101.6121.280II
0.3640.214100.1652.276.180.6090.564101.790.0795.8919.714II
0.3770.396104.22107.13105.670.6790.618114.2699.4106.831.160II
0.3470.35794.8595.3695.10.620.648103.68104.58104.139.020II
0.3590.38198.59102.6100.60.5890.6198.1298.0198.07-2.532II
0.3570.39297.97105.92101.950.4890.49780.1778.579.34-22.6121II
0.3690.361101.7296.5799.140.5910.66698.47107.68103.083.940II
0.4960.531141.37147.88144.630.6150.661102.78106.82104.8-39.830II
0.390.466108.27128.26118.270.4130.58566.5493.780.12-38.1520II
0.3670.425101.09115.88108.490.5340.54388.2586.4587.35-21.1413II
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:67.9K protein [Vaccinia virus]
External ID: Vaccinia-p2Venus
Protocol: A549 cells were plated at a concentration of approximately 6,000 cells per well in clear-bottom black-walled plates. Compounds were added to the assay plate followed by addition of virus (LREV) that expresses the Venus fluorescent protein early in viral infection. During the late viral infection, mCherry was also added to the plate at an MOI of 10 (~ 60,000 plaque forming units (PFU) of virus). Following virus addition, plates were incubated in a tissue-culture incubator for 12-18 hours. At increasing times post-infection, fluorescence from both Venus and mCherrry was determined using a plate-reader and standard conditions for observing Venus fluorescence (EX515/EM530) and mCherry fluorescence (EX587/EM610). In each plate, positive controls (virus infection in the presence of 1% DMSO only) and an inhibitory drug control (AraC at 500 nM) was included and used to normalize the data.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00111 uMActivity at 0.00284 uMActivity at 0.00446 uMActivity at 0.00891 uMActivity at 0.015 uMActivity at 0.029 uMActivity at 0.036 uMActivity at 0.073 uMActivity at 0.113 uMActivity at 0.149 uMActivity at 0.293 uMActivity at 0.487 uMActivity at 0.726 uMActivity at 1.458 uMActivity at 2.011 uMActivity at 3.331 uMActivity at 5.199 uMActivity at 7.343 uMActivity at 13.78 uMActivity at 20.90 uMActivity at 36.52 uMActivity at 60.71 uMActivity at 87.88 uMActivity at 127.3 uMActivity at 194.0 uMCompound QC
Inactive01.46410.71-12.454-240 0 0 0-11.2117-5.20930.6206-7.2594-11.2117QC'd by "Chem Div"
Inactive04-11.3429-16.0267-12.2608-14.6132-11.3429QC'd by "Chem Div"
Inactive01.62590.9272-14.3148-0.87740 0 0 0-15.2623-7.8142-13.6096-13.0621-15.2623QC'd by "Chem Div"
Inactive04-12.3142-9.814-12.586-8.4662-12.3142QC'd by "Chem Div"
Inactive04-8.2677-9.1999-12.2836-11.2753-8.2677QC'd by "Chem Div"
Inactive04.50450.9238-23.3577-9.005740 0 0 0-23.2147-6.6714-11.5717-9.7492-23.2147QC'd by "Chem Div"
Inhibitor11.220218.895721Partial curve; partial efficacy-4.953.51170.9065-31.7758-12.8801-2.20 0 0 0-31.4798-16.0985-9.0667-16.5103-31.4798QC'd by "Chem Div"
Inactive04.95490.8003-13.5254-8.878340 0 0 0-13.3545-10.4528-7.3986-12.9731-13.3545QC'd by "Chem Div"
Inactive02.33320.9015-5.5393840 0 0 0-5.44945.481810.30710-5.4494QC'd by "Chem Div"
Inactive01.96730.9741-21.6735-12.493740 0 0 0-21.3946-13.4008-12.078-16.6303-21.3946QC'd by "Chem Div"
Inactive04-5.6419-17.3934-2.7552-14.5706-5.6419QC'd by "Chem Div"
Inactive04.95490.8944-16.0102-8.684840 0 0 0-15.0085-7.2373-9.9603-8.6791-15.0085QC'd by "Chem Div"
Inactive01.55790.9997-19.5854-2.051340 0 0 1-5.8527-2.9594-9.4187-17.9878-5.8527QC'd by "Chem Div"
Inactive00.90.997418-20.238340 0 0 012.7737-17.6986-10.21151.105512.7737QC'd by "Chem Div"
Inactive01.88510.9998-14.291-6.778340 0 0 1-6.726-6.8986-8.4505-13.1591-6.726QC'd by "Chem Div"
Inactive00.90.9901-24.8053-6.556940 0 0 0-19.0044-6.7141-9.2211-12.2131-19.0044QC'd by "Chem Div"
Inhibitor1025.752521Partial curve; partial efficacy-54.95490.9958-34.5683-8.8157-2.20 0 0 0-34.709-9.7184-7.7631-13.3604-34.709QC'd by "Chem Div"
Inactive00.50.7446-13.2445-2.110940 0 0 0-9.3704-2.5924-6.2168-4.8236-9.3704QC'd by "Chem Div"
Inactive04.95490.8017-7.4285-18.016840 0 0 0-7.4434-13.764-5.7738-9.5578-7.4434QC'd by "Chem Div"
Activator31.6228490Partial curve; high efficacy-4.50.80.9998651142.10 0 0 1118.3965112.9568110.0983102.4909118.3965QC'd by "Chem Div"
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:galactokinase 1 [Homo sapiens]
External ID: galk-p7-sytravon
Protocol: NCGC Assay Protocol Summary:

Three uL/well of ATP-buffer solution (35 uM ATP, 20mM HEPES pH8.0, 5 mM MgCl2, 60 mM NaCl, 1 mM DTT, 0.01% BSA final concentration) was dispensed into 1536-well, assay plates (Greiner, solid white medium-binding plates) with Aurora Discovery BioRAPTR Flying Reagent Dispenser (FRD; Beckton-Dickenson). Compound solution (23 nL) was transferred to the assay plate using the Kalypsys 1536-pin tool. One uL/well GALK-galactose solution (5 nM GALK, 100 uM galactose, 20 mM HEPES pH8.0, 5 mM MgCl2, 60 mM NaCl, 1 mM DTT, 0.01% BSA final concentration) was then added using the FRD yielding a total kinase reaction volume of 4 uL/ well. After 1 hour of room temperature incubation, 4 uL Kinase-Glo Plus reagent was added for a final assay volume of 8 uL/ well. Luminescence was detected with the ViewLux plate reader (Perkin Elmer, Waltham, MA) after 10 min incubation using a 1 sec exposure time and 2x binning.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.

2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.092 uMActivity at 0.460 uMActivity at 2.300 uMActivity at 11.50 uMActivity at 57.50 uMCompound QC
Inactive041.86661.36231.21010.07930.94061.8666QC'd by Sytravon
Inactive040.91580.9541.03340.10810.29780.9158QC'd by Sytravon
Inactive041.18390.34690.9282-0.14290.85611.1839QC'd by Sytravon
Inactive040.5999-1.8607-3.4054-0.9612-1.6560.5999QC'd by Sytravon
Inactive040.71722.02491.3236-0.247-0.0230.7172QC'd by Sytravon
Inactive04-0.12312.05171.94191.09132.0523-0.1231QC'd by Sytravon
Inactive043.96674.2244.41293.43432.8463.9667QC'd by Sytravon
Inactive041.67122.52883.02861.30841.92241.6712QC'd by Sytravon
Inactive04-0.20680.90711.44840.51760.0441-0.2068QC'd by Sytravon
Inactive04-8.9193-6.801-5.7497-7.5221-7.8954-8.9193QC'd by Sytravon
Inactive04-5.4427-5.048-3.3808-6.4571-6.3565-5.4427QC'd by Sytravon
Inactive04.50450.95736-1.236440 0 0 0 1-1.7138-0.9469-0.4156-1.86364.7904-1.7138QC'd by Sytravon
Inactive042.97241.70321.48131.33161.14012.9724QC'd by Sytravon
Inactive040.48120.35940.5958-0.41270.38760.4812QC'd by Sytravon
Inactive04-0.5204-0.2624-0.7504-0.76630.0982-0.5204QC'd by Sytravon
Inactive04.95490.62370-3.284540 0 0 0 01.3559-1.7513-4.8204-0.5682-1.17481.3559QC'd by Sytravon
Inactive042.82980.48821.63360.17992.8852.8298QC'd by Sytravon
Inactive041.62222.62291.29950.98180.67471.6222QC'd by Sytravon
Inactive040.99152.90751.8850.61362.0290.9915QC'd by Sytravon
Inactive043.73463.1893.59283.4942.78493.7346QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: huntington-HTT2-p1-FF-overN
Protocol: PROTOCOL TABLES
SEQUENCE No. (1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE and DESCRIPTION.
1; Reagent; 4 uL; 2,500 Hek293 luciferase reporter cells per wells
2; Time; 24 hour; 37C, 5% CO2
3; Compound; 23 nL; Control inhibitor / compound library
4; Time; 24 hour; 37C, 5% CO2
5; Reagent; 2.5 uL; Firefly Luc reagent; Dual-Glo Luciferase Reporter Assay System (Promega)
6; Time; 10 min; room temperature incubation
7; Detection; Luminescence; FLuc

NOTES (numbers refer to sequence above)
1; High-throughput screening, measuring luminescence from a Hek293 luciferase reporter, was performed in 1,536 well white-walled tissue-culture treated plates. 2,500 cells were plated in 4 muL of Opti-MEM per well using a Multidrop Combi Reagent Dispenser (ThermoFisher).
2; Assay plates were cultured for 24 hours.
3; Control inhibitor (PTC124; final concentration of 50 uM) and compound library (at final concentrations of 460 nM - 57.5 uM) were added to the assay plate using the Kalypsis Pintool Robotic System equipped with 1536 pinheads.
4; Cells were then incubated for 24 hours at 37 degrees C prior to luminescence measurements.
5; In all cases, luminescence was measured using the Dual-Glo Luciferase Reporter Assay System (Promega) following the manufacturer's instructions.
6; Room temperature incubation.
7; Luminescence signal was obtained using the PerkinElmer ViewLux plate reader. Results were normalized to vehicle control (0% activity) and zero RLU (-100% activity).
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentFF-overN-Activity_ScoreFF-overN-Curve_DescriptionFF-overN-Fit_LogAC50FF-overN-Fit_HillSlopeFF-overN-Fit_R2FF-overN-Fit_InfiniteActivityFF-overN-Fit_ZeroActivityFF-overN-Fit_CurveClassFF-overN-Excluded_PointsFF-overN-Max_ResponseFF-overN-Activity at 0.0000389080 uMFF-overN-Activity at 0.0001066275 uMFF-overN-Activity at 0.0001907270 uMFF-overN-Activity at 0.0004536066 uMFF-overN-Activity at 0.0007545096 uMFF-overN-Activity at 0.0009784578 uMFF-overN-Activity at 0.00290 uMFF-overN-Activity at 0.00507 uMFF-overN-Activity at 0.00876 uMFF-overN-Activity at 0.016 uMFF-overN-Activity at 0.026 uMFF-overN-Activity at 0.052 uMFF-overN-Activity at 0.080 uMFF-overN-Activity at 0.235 uMFF-overN-Activity at 0.459 uMFF-overN-Activity at 0.739 uMFF-overN-Activity at 1.169 uMFF-overN-Activity at 2.226 uMFF-overN-Activity at 6.007 uMFF-overN-Activity at 11.47 uMFF-overN-Activity at 19.12 uMFF-overN-Activity at 25.20 uMFF-overN-Activity at 57.49 uMFF-overN-Activity at 115.7 uMFF-overN-Activity at 221.8 uMFF-overN-Activity at 288.0 uMCompound QC
Inactive0-63.57220.99988-4.57340 0 0 10.0919-4.64423.17137.90590.0919QC'd by Sytravon
Inactive0-4.73.57220.95511-10.455640 0 0 010.3819-7.9209-13.2963-7.862910.3819QC'd by Sytravon
Inactive0-5.13.92950.9982-20.5535-1.415440 0 0 0-20.4612-1.7364-0.7629-17.0693-20.4612QC'd by Sytravon
Inactive0-4.510.6282-19.163-140 0 0 0-14.30250.9125-7.5415-3.4541-14.3025QC'd by Sytravon
Inactive0-5.952.25260.9995-16.77353.540 0 0 0-16.73043.5028-6.5545-16.8946-16.7304QC'd by Sytravon
Inactive0-50.60.9765-26.06220.05740 0 0 0-20.0519-0.7858-6.9465-12.3383-20.0519QC'd by Sytravon
Inactive0-4.51.44870.9277-11.1274140 0 0 0-7.60622.4742-0.4153-0.9904-7.6062QC'd by Sytravon
Inactive0-5.350.60.9824-10.06549.540 0 0 0-7.55457.85382.9441-1.9949-7.5545QC'd by Sytravon
Inactive00042.49361.95961.29456.65052.4936QC'd by Sytravon
Inactive0-4.552.53340.6159-11.4423-23.995640 0 0 0-13.2853-18.831-28.7463-22.7697-13.2853QC'd by Sytravon
Inactive0004-4.075600-9.752-4.0756QC'd by Sytravon
Inactive0-4.651.64360.9984-26.37236.540 0 0 0-20.72696.89525.4769-1.6781-20.7269QC'd by Sytravon
Inactive0-4.354.95490.8085-22.18351.540 0 0 0-16.81961.0548-3.75337.1078-16.8196QC'd by Sytravon
Inactive0004-9.2421-7.2234-5.2389-3.1916-9.2421QC'd by Sytravon
Inactive0004-12.9119-16.3463-12.7285-15.6237-12.9119QC'd by Sytravon
Inactive0-6.84.95490.468-15.2266340 0 0 0-8.97070-26.8555-10.0921-8.9707QC'd by Sytravon
Inactive00042.68233.85667.61518.00282.6823QC'd by Sytravon
Inactive0-6.84.95490.4875-11.1688240 0 0 1-1.24310-17.6407-4.4754-1.2431QC'd by Sytravon
Inactive0-4.552.35310.986-25.99323.540 0 0 0-21.24435.12471.6510.2461-21.2443QC'd by Sytravon
Inactive0-5.14.0950.7467-1.9217640 0 0 0-2.01812.90348.923-0.4967-2.0181QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: stopgo-p2-SytraCBC-dual-FF
Protocol: Reagents:
StopGo2A HEK-NPG-Luc cells and other necessary media and controls were provided by Dr. Atkins's lab. Compound PTC124 was used as a control. Dose response was assessed using a 1:2 dilution of control compound, with the top dose of 50uM final concentration. Background signal was normalized to wells treated with DMSO only.

Assay Protocol:
In brief, four microliters (2400 cells/well) of StopGo2A HEK-NPG-Luc cells were plated and incubated overnight at 37C. Twenty-three nanoliters of compounds and control were added to the wells using a 1536 array Kalypsys pintool workstation. After an over night incubation (at 37C) with compounds / control, 2.5 uL of Dual/Glo Firefly reagent was added. Firefly luciferase signal was obtained using the PerkinElmer ViewLux plate reader after 20min of room temperature incubation. Dual/Glo Renilla Lucifrase reagents were then added followed by additional 20 min room temperature incubation. Finally, the renilla luciferase signal was obtained using the PerkinElmer ViewLux reader.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00460 uMActivity at 0.023 uMActivity at 0.046 uMActivity at 0.112 uMActivity at 0.230 uMActivity at 0.460 uMActivity at 0.871 uMActivity at 0.984 uMActivity at 1.439 uMActivity at 2.300 uMActivity at 4.560 uMActivity at 5.230 uMActivity at 7.193 uMActivity at 11.50 uMActivity at 22.87 uMActivity at 26.96 uMActivity at 44.22 uMActivity at 57.50 uMActivity at 114.7 uMActivity at 121.0 uMCompound QC
Inactive0-6.84.95490.81592-8.87640 0 0 0-0.3922-6.984.92071.8774-0.3922QC'd by CBC
Inactive0-64.95490.99893-8.474340 0 0 1-8.9436-8.7286-0.74863.1076-8.9436QC'd by CBC
Inactive0-5.451.75290.999931.5-1.401840 0 0 10-1.16822.48627.83070QC'd by CBC
Inactive0-60.60.9574-3.55781840 0 0 0-2.964813.96745.37522.1822-2.9648QC'd by CBC
Activator0.891355.35450Complete curve; partial efficacy; poor fit-6.054.95490.996847.9876-7.36691.40 0 0 045.9161-7.516336.245149.430745.9161QC'd by CBC
Inactive04-0.40613.15817.14891.8466-0.4061QC'd by CBC
Inactive048.02199.75862.63914.5158.0219QC'd by CBC
Inactive0-4.72.90230.933614-3.767840 0 0 013.2222-6.4732-1.1472-0.694213.2222QC'd by CBC
Inactive0-6.754.95490.62345.5-2.856340 0 0 1-0.8656-1.96369.1142.2001-0.8656QC'd by CBC
Activator3.1623120.58050Partial curve; high efficacy; poor fit-5.52.58841125.84165.26112.30 0 0 1-13.87585.026113.541121.9395-13.8758QC'd by CBC
Inactive0-5.054.0950.99539.916310.540 0 0 039.90711.81019.210332.148439.907QC'd by CBC
Inactive0-6.754.95490.68855.5-14.272340 0 0 0-1.4364-12.310313.15054.6329-1.4364QC'd by CBC
Inactive0-6.84.95490.48777-4.29940 0 0 012.0135-2.33258.02360.561112.0135QC'd by CBC
Activator14.125456.99660Partial curve; partial efficacy; poor fit-4.851.55790.997555.2294-1.76712.40 0 0 049.6994-2.53631.145221.508449.6994QC'd by CBC
Inactive0-6.74.95490.69788.5-0.540 0 0 10.95120.101311.40645.14890.9512QC'd by CBC
Inactive0-6.84.95490.67113-7.754240 0 0 10-4.378520.24456.04850QC'd by CBC
Inactive04-3.0754-7.5861-4.61-0.5732-3.0754QC'd by CBC
Inactive0-4.950.70.969-220.540 0 0 02.43720.237815.432810.70092.437QC'd by CBC
Inactive0-6.84.50450.7622-2-15.31340 0 0 0-4.8971-12.76082.2051-3.2116-4.8971QC'd by CBC
Inactive0-6.054.50450.999713-6.546540 0 0 10-6.28888.282512.94060QC'd by CBC
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:ICCB-Longwood/NSRB Screening Facility, Harvard Medical School 靶标:
External ID: HMS1303
Protocol: Prior to screening, lyophilized FITC-GIV peptide (a.a. 1671-1701) is dissolved in 100% DMSO to a concentration of 0.5 mM, then further diluted with water to a final concentration of 50 microM. One stock was prepared in batch for the entire screen and aliquoted. All protein stocks were stored at -80C. Thawing of aliquots on the day of the assay was performed rapidly at room temperature.

Prior to transfer of screening compounds, experimental wells of 384-well assay plates were pre-filled with 37.8 nM of FITC-GIV peptide (for 25 nM final concentration) in a 10 microL volume of assay buffer (50 mM Tris [pH 7.4], 100 mM NaCl, 10 mM MgCl2, 5 mM EDTA, 0.4% NP-40, 30 microM GDP, 1 mM DTT). Control wells were pre-filled with 37.8 nM of FITC-GIV peptide in 10 microL of assay buffer containing either 1% DMSO (vehicle negative control) or 45.3 microM AlCl3+15.1 mM NaF (AlF4- positive control). Each plate contained 16 negative control and 16 positive control wells. Plates were centrifuged at 1000xg for 2 minutes to eliminate bubbling on the surface. Following, 100 nL of experimental compound was pin-transferred into individual wells for each of two replicate assay plates (A&B). After pin-transfer, 5 microL of 3 microM His-tagged rat Galphai3 purified from E. coli (for 1 microM final concentration) was added to each well, and assay plates were shaken at low speed for 5 seconds. Final assay volume was 15 microL. Plates were centrifuged at 1000xg for 2 minutes to eliminate bubbling on the surface and shaken for 10 seconds prior to an incubation of 90 minutes at room temperature. Plates were protected from prolonged light exposure. All manipulations were performed at room temperature.

Assay plates were read with a PerkinElmer Wallac EnVision Multilabel 2103 plate reader using the fluorescent polarization measurement technology with a D505fp/D535 dual mirror and a 480 nm excitation filter. 535 nm emission filters were used for P and S channel reads at 11 mm measurement height with 30 flashes and detector gains of 319 and 563. G-factor 0.96.

Negative control: DMSO
Positive control: Aluminum tetrafluoride (AlF4-, composite of NaF and AlCl3)
Comment: Calculated result values and scoring of active compounds:

Z-score: Indicates the number of standard deviations an experimental condition is from the mean. It is calculated based on plate average (u) and standard deviation (s) of experimental well fluorescence polarization (FP) measurements for each replicate. Z-score (z) is defined as the quotient of the mean of the experimental well population subtracted from an individual well's FP (x), divided by the standard deviation within the experimental wells; z = (x-u)/s.

Normalized percent control: calculated by subtracting plate average positive control FP from experimental well FP, dividing by the difference between plate average negative and positive control FP, and multiplying by 100.

STD: the number of standard deviations from the plate average negative control FP for each replicate experimental well

Compound wells with FP values exceeding +5 standard deviations from the negative control sample average were flagged as potential aggregators or fluorescence quenchers due to their high polarization signal (HighPol) and were excluded from further consideration. Activity scores were calculated by averaging the replicate normalized percent of control values and subtracting from 100 (score based on single replicate if data for other replicate was excluded for any reason). Result values < 0 were set to 0 (no activity) and > 100 were set to 100 (100% activity). Compounds with activity score >= 15 were considered active.
mP_AFluorTotal_APchan_ASchan_AmP_BFluorTotal_BPchan_BSchan_BZ-score_AZ-score_BPercent Ctrl_APercent Ctrl_BSTD_ASTD_BNote: Polarization Artifact
122.41957988860658427448204128.11963767260572207523232-1.18225-0.63523293.2647101.541-1.80030.362745
124.61958252660565717469384129.81962517560450197535137-0.634716-0.19961197.3807104.669-0.7001171.09906
124.21966389660838267496244126.21969903460848867529262-0.734268-1.122196.632498.0451-0.90015-0.460198
1231973179861103407511118126.71971411360873537539407-1.03292-0.99397994.387398.965-1.50025-0.243634
128.11989636061370667622228130.519724618607261775793840.236366-0.0202377103.929105.9571.050181.40225
125.61986771661402087587300131.31967349360531227567249-0.3858350.1847699.2516107.429-0.2000331.74875
127.72002396861782517667466128.819866494612424676180020.136814-0.455859103.181102.8290.8501420.665934
129.21961772360456307526463132.719789155608172076257150.5101340.543507105.987110.0051.600272.35513
130.91974707560775087592059133.819696771604822176003290.9332310.82538109.167112.0292.450412.83157
127.41995714661589967639154131.119907155612592276553110.06214940.133511102.619107.0610.7001171.66213
128.61970436060754757553410127.919896451613799676204590.360806-0.686482104.864101.1731.300220.276119
126.51975466161009937552675131.21981143860959967619446-0.1618430.159136100.935107.2450.2500421.70544
125.21989803761513307595377128.51982052261116137597296-0.485388-0.53273398.5033102.277-0.4000670.535996
125.21974444761039237536601130.11961319460400397533116-0.485388-0.12273798.5033105.221-0.4000671.229
127.41996280061609707640860131.319894559612117976522010.06214940.18476102.619107.4290.7001171.74875
128.82002040261715807677242132.519888130611339976613320.4105820.492258105.239109.6371.400232.26851
128.31997122561589057653415131.820071564617330377249580.2861420.312884104.303108.3491.150191.96532
128.7197498216088940757194112919670633606278775450590.385694-0.404609105.051103.1971.350230.752559
125.719727542609617775351881291962415560487067526743-0.360947-0.40460999.4387103.197-0.1500250.752559
127.82004995261859487678056130.820021937616251676969050.1617020.0566366103.368106.5090.900151.53219
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: stopgo-p2-SytraCBC-dual-Ren
Protocol: Reagents:
StopGo2A HEK-NPG-Luc cells and other necessary media and controls were provided by Dr. Atkins's lab. Compound PTC124 was used as a control. Dose response was assessed using a 1:2 dilution of control compound, with the top dose of 50uM final concentration. Background signal was normalized to wells treated with DMSO only.

Assay Protocol:
In brief, four microliters (2400 cells/well) of StopGo2A HEK-NPG-Luc cells were plated and incubated overnight at 37C. Twenty-three nanoliters of compounds and control were added to the wells using a 1536 array Kalypsys pintool workstation. After an overnight incubation (at 37C) with compounds / control, 2.5 uL of Dual/Glo Firefly reagent was added. Firefly luciferase signal was obtained using the PerkinElmer ViewLux plate reader after 20min of room temperature incubation. Dual/Glo Renilla Lucifrase reagents were then added followed by additional 20 min room temperature incubation. Finally, the renilla luciferase signal was obtained using the PerkinElmer ViewLux reader.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00460 uMActivity at 0.023 uMActivity at 0.046 uMActivity at 0.092 uMActivity at 0.115 uMActivity at 0.230 uMActivity at 0.460 uMActivity at 0.911 uMActivity at 1.057 uMActivity at 1.771 uMActivity at 2.301 uMActivity at 4.634 uMActivity at 5.773 uMActivity at 11.50 uMActivity at 16.40 uMActivity at 23.82 uMActivity at 35.99 uMActivity at 57.50 uMActivity at 114.4 uMActivity at 129.1 uMActivity at 273.4 uMActivity at 288.0 uMCompound QC
Activator15.848972.76670Partial curve; partial efficacy; poor fit-4.810.995671.5604-1.20632.40 0 0 056.9219-2.70325.718429.072156.9219QC'd by CBC
Inactive0-5.652.72020.876-3.076-11.137840 0 0 0-4.8556-10.9482-10.07-0.8967-4.8556QC'd by CBC
Activator14.1254116.35980Partial curve; high efficacy; poor fit-4.852.25260.9976114.9836-1.37612.30 0 0 0110.7742-4.01652.526342.9951110.7742QC'd by CBC
Inactive0-4.354.95490.62039-2.125740 0 0 06.649-3.82222.8199-4.68816.649QC'd by CBC
Activator22.387269.80210Partial curve; partial efficacy-4.651.75290.99966.6142-3.18792.20 0 0 055.5041-3.9302-1.545313.513455.5041QC'd by CBC
Inactive04-10.8628-6.0946-6.3923-2.7723-10.8628QC'd by CBC
Activator3.162346.56160Complete curve; partial efficacy-5.51140.0835-6.47811.20 0 0 037.587-4.78416.055430.206537.587QC'd by CBC
Inactive04-5.1322-4.7917-1.3649-10.6528-5.1322QC'd by CBC
Inactive0-4.44.44950.7339130.999240 0 0 011.2209-2.50075.02590.301511.2209QC'd by CBC
Inactive0411.75236.54273.70753.760211.7523QC'd by CBC
Inactive04-13.953-10.1902-10-18.4577-13.953QC'd by CBC
Inactive04-4.5083-2.06295.4547-1.4612-4.5083QC'd by CBC
Inactive04-7.5306-15.4441-6.4413-15.0974-7.5306QC'd by CBC
Inactive0-4.652.25260.9477-26.3385-15.893440 0 0 0-25.2821-17.3753-14.9112-17.8522-25.2821QC'd by CBC
Inactive04-12.6647-11.4457-10.7961-20.5075-12.6647QC'd by CBC
Inactive0-5.14.95490.594-16.1597-5.606740 0 0 1-3.9011-10.3012-3.0056-14.7164-3.9011QC'd by CBC
Inactive0-5.154.95490.9234-15.5602-3.948840 0 0 1-5.8836-5.9172-2.4573-14.6335-5.8836QC'd by CBC
Inactive0-4.354.44950.7251-13.3612-240 0 0 0-10.7177-1.1966-5.59780.8791-10.7177QC'd by CBC
Inactive0-5.74.50450.80751.010810.540 0 0 04.435110.69059.7726-1.65774.4351QC'd by CBC
Activator35.481330.78070Partial curve; partial efficacy; poor fit-4.451.47810.970347.280716.52.40 0 0 037.296914.420618.816221.266337.2969QC'd by CBC
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: PI4K2A
Protocol: For the robotic screening, the ADP-Glo assay using the ADP-Glotrade mark Kinase Assay kit from Promega was miniaturized and optimized on 1536-well white solid bottom plates (Greiner Bio-one). The substrate, 1.2 mM PI, prepared in the assay buffer (40mM Tris pH7.5, 20mM MgCl2, 1mM EGTA, 0.4% Triton X-100, 0.5mM DTT, 0.5mg/ml BSA) and PI4K2A enzyme, diluted also in the assay buffer to 4ug/mL, were dispensed onto the plates in equal volumes (1microl/well), pinned with 23 nL/well tested compounds or control followed by dispensation of 1microl/well 300microM ATP. The plates were incubated for one hour. Then, 2 muL/well of ADP-Glo reagent was added and incubated for 40 minutes. Next, 4microL/well of Kinase Detection Buffer was added to the plates and incubated for additional 40 minutes. All incubation steps were performed at ambient temperature. The resulting luminescence signal was measured on Viewlux plate reader (PerkinElmer). Adenosine, a partial non-specific inhibitor, was used as a positive control at 100microM final concentration to assess the assay's quality and plate-to-plate reproducibility. We also used "no enzyme" control to gauge the assay's maximal potential inhibition (IC100).
Comment: PubChem score indicates % inhibition activity at 76.9 uM of the compound (Max_response). Active compounds with Max_response greater than 90%, PUBCHEM_ACTIVITY_SCORE is 100. Active compounds with Max_response greater than 80%, PUBCHEM_ACTIVITY_SCORE is 80. Active compounds with Max_response between 50% and 80%, PUBCHEM_ACTIVITY_SCORE is 60. Inconclusive Compounds with Max_response between 30% and 50% have PUBCHEM_ACTIVITY_SCORE 30. For all inactive compounds with Max_response less than 30%, PUBCHEM_ACTIVITY_SCORE is 0
Max_responseActivity at 15.40 uMActivity at 76.90 uMCompound QC
-4.7811-3.1736-4.7811QC'd by ChemBridge
-4.7807-1.5118-4.7807QC'd by Life Chemicals
-4.7807-3.1454-4.7807QC'd by InterBioScreen
-4.78063.611-4.7806QC'd by ChemBridge
-4.7805-1.6207-4.7805QC'd by Life Chemicals
-4.7804-6.8292-4.7804QC'd by Asinex Ltd.
-4.7801-0.8209-4.7801QC'd by Chem Div
-4.7798-1.211-4.7798QC'd by Enamine
-4.7794-4.64-4.7794QC'd by DPISMR
-4.77933.4727-4.7793QC'd by Enamine
-4.7789-4.0331-4.7789QC'd by Chem Div
-4.77874.2825-4.7787QC'd by Asinex Ltd.
-4.7786-5.1813-4.7786QC'd by Florida Center for Heterocyclic Compounds
-4.7778-3.0892-4.7778QC'd by ChemBridge
-4.7773-1.3982-4.7773QC'd by Key Organics Ltd.
-4.7772-4.2776-4.7772QC'd by Sergey Kozmin - Univ. of Chicago - MLI CMLD
-4.777-7.6001-4.777QC'd by Wei Zhang - Fluorous Technologies; Inc. - MLI PSL
-4.7768-2.3177-4.7768QC'd by Specs
-4.7766-3.7761-4.7766QC'd by InterBioScreen
-4.7766-0.1513-4.7766QC'd by InterBioScreen
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:thioredoxin reductase [Rattus norvegicus]
External ID: TRXR101
Protocol: Assay protocol: 2 uL of reagents (buffer in column 4 as negative control and 90 nM rTrxR1 in columns 1-3 and 5-48) were dispensed into Greiner black solid-bottom 1,536-well assay plates, followed by 1 uL of NADPH (400 uM final concentration) to each well. The plates were centrifuged at 1000 rpm for 15 seconds and subsequently incubated for 5 min at room temperature (~22 deg C) to allow for rTrxR1 reduction. Compounds (23 nL) were then transferred via Kalypsys pin tool equipped with 1536-pin array (10 nL slotted pins, V&P Scientific, San Diego, CA). In addition, a duplicate 2-fold serial dilution of the control compounds auranofin, a known gold-based TrxR1 inhibitor, and juglone (5-hydroxy-1,4-naphthoquinone), a natural TrxR1 substrate, were pin-transferred to columns 2 and 3, respectively. After incubation for 15 min at room temperature (~22 deg C), 1 uL of selenite (400 uM final concentration) were dispensed to each well. The plate was immediately transferred to a ViewLux high-throughput CCD imager (PerkinElmer), wherein kinetic measurements of NADPH fluorescence (Ex 340 nm, Em 450 nm) were acquired (8 minute kinetic read, see Table 1). Read 1 was utilized to assess the capacity of a compound to serve as an rTrxR1 substrate, i.e. a decrease in NADPH fluorescence compared to the no-compound background is an indication of a substrate behavior for that particular compound. For inhibitory activity of a compound, delta values, computed as the difference in fluorescence intensity between the first and last reads of an 8-minute time kinetic window, were used. All reagents were diluted in an assay buffer consisting of 50 mM Tris-HCl, pH 7.5, 2 mM EDTA, and 0.01% Tween-20.

Throughout the screen, reagent bottle and all liquid lines were made light-tight to minimize reagent degradation. All screening operations were performed on a fully integrated robotic system (Kalypsys, San Diego, CA) containing one RX-130 and two RX-90 anthropomorphic robotic arms (Staubli, Duncan, SC). Library plates were screened starting from the lowest and proceeding to the highest concentration, and a 'double-pinning' step of the highest concentration was required to access higher concentrations of compounds. Vehicle-only plates, with DMSO being pin-transferred to the columns 5-48, were inserted uniformly at the beginning and the end of each library in order to monitor and record any shifts in the background, which can be affected by reagent dispensers or loss in enzyme activity over time. Screening data were corrected, normalized, and concentration-effect relationships were derived by using publicly-available curve fitting algorithms developed in-house (http://ncgc.nih.gov/pub/openhts).
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00366 uMActivity at 0.018 uMActivity at 0.023 uMActivity at 0.046 uMActivity at 0.073 uMActivity at 0.091 uMActivity at 0.165 uMActivity at 0.229 uMActivity at 0.457 uMActivity at 0.575 uMActivity at 0.940 uMActivity at 1.600 uMActivity at 2.289 uMActivity at 3.140 uMActivity at 4.699 uMActivity at 9.139 uMActivity at 11.40 uMActivity at 21.25 uMActivity at 28.60 uMActivity at 57.07 uMActivity at 80.69 uMActivity at 114.0 uMActivity at 162.0 uMActivity at 229.0 uMCompound QC
Inactive45.72148.631410.15099.45326.79415.7214QC'd by "Asinex Ltd."
Inactive44.61124.6112QC'd by "Asinex Ltd."
Inactive4-2.3744-2.3744QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 06.7367-4.00622.24971.42662.00113.38086.7367QC'd by "Asinex Ltd."
Inactive4-2.7854-1.3593-1.6912-2.00741.8167-0.4278-2.7854QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-2.73882.76910.2194.5423.4083-2.7388QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-0.01174.05790.94471.1341-2.3162-0.0117QC'd by "Asinex Ltd."
Inactive40 0 0 0 03.769511.71047.43534.05683.10083.7695QC'd by "Asinex Ltd."
Inactive45.54985.90443.24915.2766.93335.5498QC'd by "Asinex Ltd."
Inactive412.084312.909110.11912.577412.251512.0843QC'd by "Asinex Ltd."
Inactive4-0.26292.95251.14641.45140.2181-0.2629QC'd by "Asinex Ltd."
Inactive48.32116.29417.2894.28013.18948.3211QC'd by "Asinex Ltd."
Inactive4-3.1455-0.84532.5993-2.2393-0.3052-3.1455QC'd by "Asinex Ltd."
Inactive40 0 0 0 13.78677.87045.31354.3995-2.74563.7867QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 1-8.8426-4.2899-7.4803-5.849-5.1242-0.9961-8.8426QC'd by "Asinex Ltd."
Inactive43.17043.75230.21974.2066-1.76832.17843.1704QC'd by "Asinex Ltd."
Inactive411.644911.6449QC'd by "Asinex Ltd."
Inactive4-0.87222.8697-0.0842-0.97930.7832-1.5591-0.8722QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 0-15.52351.87083.8960.84580.9194-4.7588-15.5235QC'd by "Asinex Ltd."
Inactive40 0 0 0 06.80262.85661.8310.9212-2.5846.8026QC'd by "Asinex Ltd."
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:N/A
External ID: ovca-p5-p6-adhesion
Protocol: PROTOCOL TABLE (as described by Inglese J, Shamu CE and Guy RK. 2007)
SEQUENCE No. (e.g., 1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE; DESCRIPTION.
1; Cells; 4 uL; primary human omental fibroblast, black, clear bottom, low base, 1536-well Aurora assay plate.
2; Incubation; 48 hr; 37C.
3; Cells; 3 uL; 1,200 SKOV3ip1-GFP cells.
4; Compounds; 23nL; acoustic dispenser.
5; Incubation; 2 hr; room temperature.
6; Incubation; 16 hr; 37C.
7; Wash; 5 uL; 1x PBS.
8; Fixing; 5 uL; 4% paraformaldehyde (PFA).
9; Incubation; 15 min; room temperature
10; Wash, 5 uL; 1x PBS.
11; Detection; Fluorescence, excitation filter 488 nm, emission filter 509 nm.

NOTES (numbers refer to Sequence numbers above)
1. For the 1,536-well format, 40 primary human omental fibroblasts and 400 mesothelial cells were seeded with 0.02 mug fibronectin and 0.02 mug collagen type I in 4 muL of growth media (2.3 mm2; Supplementary Fig. S1A).
2. Assay plates were incubated for 48 hours at 37 C.
3. After incubation, 1,200 SKOV3ip1-GFP were seeded in 3 muL of serum-free media (growth media minus FBS) on top of primary human omental cells.
4. Compounds or controls were added to each well immediately after the addition of the cancer cells. Compounds were screened in four doses (0.36-46 mumol/L), and the plates contained the positive control (Tomatine) in eight doses (0.035-75 mumol/L) and DMSO (equal volume controls)
5 - 6. The plates were incubated at room temperature for 2 hours and then at 37 degrees C for 16 hours.
7 - 10. Following incubation, the media were aspirated and each well washed with PBS (5 muL) and then fixed with 4% paraformaldehyde (PFA; 5 muL). After 15 minutes, the PFA solution was aspirated, PBS (5 muL) was added.
11. The number of GFP-labeled cells analyzed using a fluorescent cytometer TTP LabTech Acumen eX3 using 488 nm excitation filter and 509 nm emission filter. Data was normalized to the DMSO treated for negative and Tomatine treated wells for positive control.

REFERENCES:
Inglese J, Shamu CE and Guy RK, Reporting data from high throughput screening of small molecule libraries, Nature Chemical Biology, 2007, 3(8): 438-441. doi.org/10.1038/nchembio0807-438.

Yasgar A, Shinn P, Jadhav A, Auld DS, Michael S, Zheng W, Austin CP, Inglese J and Simeonov A, Compound Management for Quantitative High-Throughput Screening. J. Assoc. Lab. Auto., 2008, 13: 79-89. doi: 10.1016/j.jala.2007.12.004.
Comment: Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0000311982 uMActivity at 0.0000854986 uMActivity at 0.0001248848 uMActivity at 0.0002290931 uMActivity at 0.0004033765 uMActivity at 0.0007802858 uMActivity at 0.00138 uMActivity at 0.00235 uMActivity at 0.00481 uMActivity at 0.00706 uMActivity at 0.021 uMActivity at 0.031 uMActivity at 0.063 uMActivity at 0.111 uMActivity at 0.190 uMActivity at 0.347 uMActivity at 0.569 uMActivity at 1.004 uMActivity at 1.717 uMActivity at 3.506 uMActivity at 5.147 uMActivity at 15.13 uMActivity at 23.20 uMActivity at 45.80 uMActivity at 92.17 uMCompound QC
Inactive0-4.44.95490.7-26.5489-2.540 0 0 0-18.7908-9.95531.45561.5083-18.7908QC'd by Sytravon
Inactive0-6.34.95490.83720.73351340 0 0 03.878311.00870-1.47213.8783QC'd by Sytravon
Inactive000400-7.076700QC'd by Sytravon
Inactive0-6.34.95490.42262.5-6.053240 0 0 1-1.1886-4.62777.6987-2.282-1.1886QC'd by Sytravon
Inactive0-4.854.0950.9177-14.9072340 0 0 0-14.08935.888400-14.0893QC'd by Sytravon
Inactive0-4.454.95490.95657-5.210640 0 0 04.4674-6.4255-3.9724-5.77644.4674QC'd by Sytravon
Inactive00045.1862-0.56328.26719.24945.1862QC'd by Sytravon
Inactive0-6.34.95490.6755-15.57673.540 0 0 100-21.7306-9.31520QC'd by Sytravon
Inactive0-4.454.95490.6676-12.8912340 0 0 0-9.4927009.4652-9.4927QC'd by Sytravon
Inactive0-6.34.95490.3745-10.57291440 0 0 14.139610.0525-25.89414.78664.1396QC'd by Sytravon
Inactive000402.67112.75333.70280QC'd by Sytravon
Inactive0004-3.6287-7.1208-7.42331.4494-3.6287QC'd by Sytravon
Inactive0-5.354.95490.728610.5-0.471540 0 0 08.0023.2258-4.559613.14728.002QC'd by Sytravon
Inactive0-5.752.33320.9993-13.324715.540 0 0 114.874814.90020-12.770614.8748QC'd by Sytravon
Inactive0-5.44.95490.79279-1.106240 0 0 05.94010.6656-3.005211.92895.9401QC'd by Sytravon
Inactive00042.60190002.6019QC'd by Sytravon
Inactive00043.4483-2.3916-0.30492.69873.4483QC'd by Sytravon
Inactive00040-0.59793.04882.0990QC'd by Sytravon
Inactive00044.38879.71611.432913.49334.3887QC'd by Sytravon
Inactive000400-6.89300QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:DNA polymerase iota [Homo sapiens]
External ID: PolI100
Protocol: Three microliters of reagents (buffer in column 3 and 4 as negative control and 10 nM Pol iota in columns 1, 2, and 5-48) will be dispensed into 1,536-well black solid-bottomed plate. Compounds (23 nL) will be transferred via Kalypsys pin tool equipped with 1536-pin array. The plates will then be incubated for 15 min at room temperature, and 1 muL substrate (50 nM final concentration) will be added to start the reaction and kinetically read twice at 0 min and 10 min on the Viewlux reader.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00174 uMActivity at 0.00357 uMActivity at 0.00697 uMActivity at 0.016 uMActivity at 0.028 uMActivity at 0.056 uMActivity at 0.105 uMActivity at 0.226 uMActivity at 0.447 uMActivity at 0.627 uMActivity at 0.951 uMActivity at 1.818 uMActivity at 2.333 uMActivity at 4.073 uMActivity at 6.884 uMActivity at 11.29 uMActivity at 15.41 uMActivity at 25.59 uMActivity at 50.19 uMActivity at 58.90 uMActivity at 114.8 uMActivity at 162.0 uMActivity at 229.0 uMCompound QC
Activator10038.2868Single point of activity-44.95490.9173401.713230 0 0 0 030.01325.23092.13492.7977-1.48930.0132QC'd by "Asinex Ltd."
Activator10054.6995Single point of activity-44.95490.906756.29881.599330 0 0 0 042.86936.50444.3471-0.522-3.405842.8693QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-17.247621.616912.731122.870220.8427-17.2476QC'd by "Asinex Ltd."
Activator10074.7794Single point of activity-44.95490.904176.01081.231430 0 0 0 057.88046.71663.01043.7559-6.890557.8804QC'd by "Asinex Ltd."
Activator10053.1278Single point of activity-44.95490.920564.542711.414930 0 0 0 051.512412.068710.669616.44417.363851.5124QC'd by "Asinex Ltd."
Activator89.125188.3489Single point of activity-4.054.95490.850483.4345-4.914430 0 0 0 066.09-2.47732.6993.4126-18.203166.09QC'd by "Asinex Ltd."
Inactive40 0 0 0 028.31327.60447.16211.8797-18.688428.3132QC'd by "Asinex Ltd."
Inactive40 0 0-12.196315.53416.1257-12.1963QC'd by "Asinex Ltd."
Activator70.7946131.9739Single point of activity-4.154.95490.9814124.2791-7.694830 0 0 0113.1868-14.95513.8059-12.5697113.1868QC'd by "Asinex Ltd."
Activator50.118798.8583Partial curve; high efficacy; poor fit-4.32.84730.9993127.119928.26162.30 0 0118.361229.714527.0534118.3612QC'd by "Asinex Ltd."
Activator89.125152.8332Single point of activity-4.054.95490.883946.5982-6.235130 0 0 0 035.9582-5.77850.0051-3.002-11.664535.9582QC'd by "Asinex Ltd."
Activator44.668458.1237Single point of activity-4.353.132163.62375.530 0 060.6935.24975.464660.693QC'd by "Asinex Ltd."
Activator10032Partial curve; partial efficacy; poor fit-44.95490.793342102.40 0 0 0 031.9276.410917.966911.731810.137931.927QC'd by "Asinex Ltd."
Activator70.794652.3872Partial curve; partial efficacy; poor fit-4.153.1320.936688.810636.42342.40 0 079.234143.000930.19579.2341QC'd by "Asinex Ltd."
Inactive40 0 0 0 010.1042-2.0932-3.6864-11.1533-2.230610.1042QC'd by "Asinex Ltd."
Activator35.481394.2201Single point of activity-4.451.71371103.2201931 0 091.996533.49919.888791.9965QC'd by "Asinex Ltd."
Activator89.1251188.8272Single point of activity-4.054.95490.9819184.3761-4.451130 0 0 0 0142.9272-4.94150.87513.8410.2429142.9272QC'd by "Asinex Ltd."
Inactive40 0 0 0 015.1304-16.5373-21.4322-21.4132-27.988115.1304QC'd by "Asinex Ltd."
Activator89.125154.5907Single point of activity-4.054.95490.898243.8763-10.714330 0 0 0 034.3843-5.7785-4.8931-14.2749-14.724834.3843QC'd by "Asinex Ltd."
Activator56.234179.3018Partial curve; high efficacy; poor fit-4.253.1320.9915106.102926.80112.30 0 098.243530.659923.039198.2435QC'd by "Asinex Ltd."
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:DNA polymerase eta [Homo sapiens]
External ID: PolE100
Protocol: Three microliters of reagents (buffer in column 3 and 4 as negative control and 10 nM Pol eta in columns 1, 2, and 5-48) were dispensed into a 1,536-well black solid-bottomed plate. Compounds (23 nL) were transferred via Kalypsys pin tool equipped with 1536-pin array. The plates were then incubated for 15 min at room temperature, and 1 muL substrate (50 nM final concentration) was added to start the reaction and kinetically read twice at 0 min and 10 min on the Viewlux reader
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00366 uMActivity at 0.018 uMActivity at 0.091 uMActivity at 0.457 uMActivity at 2.290 uMActivity at 11.40 uMActivity at 57.10 uMActivity at 114.0 uMCompound QC
Inactive4-18.6944-16.4688-21.0535-18.6569-21.2387-18.6944QC'd by "Chem Div"
Inactive40 0 0 0 0-10.5731-6.3238-5.0728-10.0177-9.1591-10.5731QC'd by "Chem Div"
Inactive40 0 0 0 0-20.9106-9.1883-14.5238-10.32-16.7599-20.9106QC'd by "Chem Div"
Inactive40 0 0 0 0-14.976-6.1336-5.9392-8.0291-13.3224-14.976QC'd by "Chem Div"
Inactive40 0 0 0 0-17.0295-7.3413-7.7338-7.023-12.9903-17.0295QC'd by "Chem Div"
Inactive40 0 0 0 0-7.64567.56026.26025.9483.5763-7.6456QC'd by "Chem Div"
Inhibitor56.234151.8151Partial curve; partial efficacy; poor fit-4.252.33320.9681-53.5412-1.7261-2.40 0 0 0 0-52.4914-0.4336-0.9826-4.7322-25.7264-52.4914QC'd by "Chem Div"
Inactive40 0 0 0 0-11.9031-7.9949-12.5613-13.3404-9.3154-11.9031QC'd by "Chem Div"
Inactive40 0 0 0 0-18.42360.2580.8315-1.6401-6.8466-18.4236QC'd by "Chem Div"
Inactive4-17.2118-16.2591-19.8884-17.4024-20.0078-17.2118QC'd by "Chem Div"
Inactive40 0 0 0 0-16.8313-10.0087-8.8391-10.5867-9.3418-16.8313QC'd by "Chem Div"
Inactive40 0 0 0 0-6.7293-13.0106-9.8363-10.4044-13.1352-6.7293QC'd by "Chem Div"
Inactive4-0.6109-0.5083.9691.39623.5402-0.6109QC'd by "Chem Div"
Inactive40 0 0 0 0-19.2263-10.4317-10.645-12.9544-8.0548-19.2263QC'd by "Chem Div"
Inactive40 0 0 0 1-19.5782-17.1915-17.4143-17.6927-30.3966-19.5782QC'd by "Chem Div"
Inactive40 0 0 0 0-17.5302-9.8783-9.1532-13.5844-9.2694-17.5302QC'd by "Chem Div"
Inactive4-11.9062-9.7368-9.5071-10.0381-13.0691-11.9062QC'd by "Chem Div"
Inactive4-19.9153-18.2374-18.6714-22.0089-21.7411-19.9153QC'd by "Chem Div"
Inactive40 0 0 0 014.59351.8292.48512.7485-0.704414.5935QC'd by "Chem Div"
Inactive40 0 0 0 0-10.4477-8.2332-4.1692-6.4251-8.3536-10.4477QC'd by "Chem Div"
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: GPR32
Protocol: The cells were thawed and plated in thawing media containing F-12 HAM (Invitrogen, #11765-054), 10% FBS (Invitrogen, #10082), 1x Glutamine, and 1x Pen/Strep onto the 175-mm flask for 24 hours. Then, thawing media was replaced with Growth media which contains 800microg/mL Geneticin (Invitrogen, #10131) and 300microg/mL Hygromycin B (Invitrogen, #10687) in addition to described above. For the assay, the cells were harvested at ~80% confluent stage with Cell Dissociation buffer (Gibco, #13151), and seeded at 2,500 cells/ 3microL/well in assay media (PathHunter(R) Cell Plating Reagent, DiscoverX, #93-0563R1B) using MultiDrop Combi dispenser (Thermo Scientific, Logan, UT) onto white solid bottom tissue culture-treated 1536-well plates (Greiner # 789173-F) and allowed to attach overnight at 37 degrees C, 95% humidity, 5% CO2, . Next, 23nL/well of compound solutions in DMSO were added with a Pin Tool (Kalypsis, San Diego, CA) to the assay plates. As the basal control (EC0), 23 nL/well of DMSO was used on each plate. The cells were incubated in the presence of compounds or DMSO for 90 minutes at 37 degrees C, 5% CO2. Subsequently, 1.5microL/well of PathHunter(R) Detection Reagent prepared per the manufacturer's instructions was added to the assay plates with BioRAPTR FRDtrade mark dispenser (Beckman Coulter, San Francisco, CA) and incubated for 1 hour at ambient temperature prior to the measurement of the luminescent signal on ViewLux(R) uHTS Microplate Imager (Perkin Elmer, Waltham, MA).
Comment: PubChem score indicates % agonism activity at 76.9 uM of the compound (Max_response). Active compounds with Max_response greater than 100% and less than 120%, PUBCHEM_ACTIVITY_SCORE is 100. Active compounds with Max_response between 80% and 100%, PUBCHEM_ACTIVITY_SCORE is 80. Active compounds with Max_response between 60% and 80%, PUBCHEM_ACTIVITY_SCORE is 60. Inconclusive Compounds with Max_response between 40% and 60% or greater than 120% have PUBCHEM_ACTIVITY_SCORE 30. For all inactive compounds with Max_response less than 40%, PUBCHEM_ACTIVITY_SCORE is 0
Max_responseActivity at 15.4 uMActivity at 76.9 uMCompound QC
17.883421.942317.8834QC'd by Sytravon
17.8836.81517.883QC'd by Sytravon
17.86055.067417.8605QC'd by Sytravon
17.832617.268517.8326QC'd by Sytravon
17.80490.194117.8049QC'd by Sytravon
17.7855-6.429517.7855QC'd by Sytravon
17.70418.901817.704QC'd by Sytravon
17.688912.465417.6889QC'd by Sytravon
17.667622.730317.6676QC'd by Sytravon
17.65375.175817.6537QC'd by Sytravon
17.644815.393717.6448QC'd by Sytravon
17.582111.735417.5821QC'd by Labotest
17.576511.200617.5765QC'd by Sytravon
17.566.565617.56QC'd by Sytravon
17.55833.612317.5583QC'd by Sytravon
17.527319.776917.5273QC'd by Sytravon
17.52322.717917.523QC'd by Sytravon
17.5209-4.241517.5209QC'd by Sytravon
17.5125-11.606617.5125QC'd by Sytravon
17.485746.79717.4857QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: tsg101-p2-sytravon-FITC
Protocol: Two uL of the Tsg101 binding domain in buffer (10 mM HEPES pH 7.5; 0.15 M NaCl, 0.01% Tween 20; 3 mM EDTA;0.1 mM TCEP) was dispensed into Greiner black MB 1536-well plates (final concentration 10 uM). Then, 23 nL of compounds or DMSO were delivered to each well using a pin tool. Finally, 2 uL of a FITC-labeled peptide containing the PTAP motif (1) in the same buffer was dispensed (50 nM final concentration) and the binding was allowed to proceed for 20 min. at r.t. Fluorescent polarization was determined using FITC excitation and polarized emission filters on a Perkin Elmer Envision.

Assay cut-off (positive/negative criteria):
Actives defined by CRC class, <25 muM; Efficacy <60% inhibition. The total fluorescent intensity from S and P channels will be used to flag fluorescent compounds.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 2.300 uMActivity at 11.50 uMActivity at 57.50 uMActivity at 115.0 uMCompound QC
Inactive04.09500.9821-0.91594.50004.00000 0 0 0-1.18004.3015-0.4289-0.3951-1.1800QC'd by Sytravon
Inactive04.0000-3.2543-3.2390-0.8825-0.1010-3.2543QC'd by Sytravon
Inactive04.0000-0.8119-1.2485-2.5976-0.7522-0.8119QC'd by Sytravon
Inactive04.95490.9072-1.0000-11.21114.00000 0 0 0-2.1046-8.50930.7717-1.3735-2.1046QC'd by Sytravon
Inactive04.95490.6593-11.6940-2.64174.00000 0 0 0-8.0783-4.8676-1.7587-0.5347-8.0783QC'd by Sytravon
Inactive04.0000-1.6059-5.8638-3.5706-3.2696-1.6059QC'd by Sytravon
Inactive04.0000-0.15212.91400.6852-0.7434-0.1521QC'd by Sytravon
Inactive02.35310.9745-6.4082-0.30654.00000 0 0 0-7.0068-1.9221-5.9860-6.1608-7.0068QC'd by Sytravon
Inactive04.0000-3.3478-0.2303-3.06970.3647-3.3478QC'd by Sytravon
Inactive04.95490.9030-13.825204.00000 0 0 0-9.8543-0.5080-1.05081.5628-9.8543QC'd by Sytravon
Inactive04.0000-0.0032-0.0209-3.5547-0.3910-0.0032QC'd by Sytravon
Inactive04.0000-3.7518-3.6157-0.4669-3.9284-3.7518QC'd by Sytravon
Inactive04.0000-3.8188-4.5612-2.1035-2.7576-3.8188QC'd by Sytravon
Inactive04.44950.8890-1.8122-7.61624.00000 0 0 0-2.5354-5.9302-1.6084-0.6769-2.5354QC'd by Sytravon
Inactive04.00000.74840.60460.9044-0.15190.7484QC'd by Sytravon
Inactive04.0000-1.7691-8.12730.9371-8.8067-1.7691QC'd by Sytravon
Inactive02.90230.9981-9.19300.50004.00000 0 0 0-8.49420.60870.6529-5.1788-8.4942QC'd by Sytravon
Inactive04.95490.8215-9.3505-1.12454.00000 0 0 0-6.5421-2.9030-0.1037-1.1081-6.5421QC'd by Sytravon
Inactive02.40640.9556-8.1547-1.42594.00000 0 0 0-6.7956-2.2492-1.1883-3.8915-6.7956QC'd by Sytravon
Inactive04.00000.39331.05660.08300.77110.3933QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: alpha-syn-p3-sytravon
Protocol: Dispense 2.5 microL yeast galactose medium per 1536-well plate, pin compound, dispense 2.5 microL alpha-synuclein expressing yeast in galactose medium at OD600=0.02 (pregrown in raffinose medium to mid-log phase) per well, incubate for 24 hr at 30 deg C, and cell growth will be measured using 5 microL of Bactiter/Glo reagent to entire plate and read using Luminescence Protocol in ViewLux.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1.#Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent activators are ranked higher than compounds that showed apparent inhibition.
2.#For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = 1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 1.2 || ratio.curve_class == 2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds also have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.369 uMActivity at 1.840 uMActivity at 9.220 uMActivity at 46.10 uMCompound QC
Inactive040.48521.33294.60870.4852QC'd by Sytravon
Inactive04-5.5864-3.7441-3.9306-5.5864QC'd by Sytravon
Inactive04-3.2988-6.1435-2.1999-3.2988QC'd by Sytravon
Inactive04-7.3584-2.8399-7.786-7.3584QC'd by Sytravon
Inactive04-4.3522-5.0741-4.8829-4.3522QC'd by Sytravon
Inactive042.6765-1.8458-1.19712.6765QC'd by Sytravon
Inactive04.95490.83456.50.409440 0 04.59721.38-0.90884.5972QC'd by Sytravon
Inactive04.0450.99112.5-5.726340 0 02.489-3.10532.92732.489QC'd by Sytravon
Inactive04-1.4069-2.8935-0.9832-1.4069QC'd by Sytravon
Inactive04-7.3135-5.7292-8.4836-7.3135QC'd by Sytravon
Inactive04-6.7284-6.1728-7.0074-6.7284QC'd by Sytravon
Inactive04-0.00633.2521.0092-0.0063QC'd by Sytravon
Inactive04-10.583-10.2134-12.7771-10.583QC'd by Sytravon
Inactive042.658-0.02534.19582.658QC'd by Sytravon
Inactive04.95490.94851.8623-6.948740 0 0-0.9481-6.2213-7.874-0.9481QC'd by Sytravon
Inactive01.98870.99964.5-11.365240 0 04.2182-10.3044-1.2284.2182QC'd by Sytravon
Inactive010.9997-16.7973-6.611240 0 0-16.081-10.0927-13.8873-16.081QC'd by Sytravon
Inactive03.57220.9976-11.2568-5.605440 0 0-11.0474-5.9212-11.0064-11.0474QC'd by Sytravon
Inactive04-10.6125-6.6641-8.211-10.6125QC'd by Sytravon
Inactive04.95490.99920-13.542840 0 00.1922-13.369-8.20470.1922QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:DNA polymerase kappa [Homo sapiens]
External ID: PolK100
Protocol: Three microliters of reagents (buffer in column 3 and 4 as negative control and 10 nM Pol kappa in columns 1, 2, and 5-48) were dispensed into a 1536-well black solid-bottom plate. Compounds (23 nL) were transferred via Kalypsys pin tool equipped with 1536-pin array. The plates were then incubated for 15 min at room temperature, and 1 uL substrate (50 nM final concentration) were then added to start the reaction and kinetically read twice at 0 min and 10 min on the Viewlux reader
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0003270000 uMActivity at 0.0007732774 uMActivity at 0.00163 uMActivity at 0.00369 uMActivity at 0.00818 uMActivity at 0.020 uMActivity at 0.030 uMActivity at 0.047 uMActivity at 0.101 uMActivity at 0.151 uMActivity at 0.243 uMActivity at 0.477 uMActivity at 0.759 uMActivity at 1.287 uMActivity at 2.393 uMActivity at 3.818 uMActivity at 6.336 uMActivity at 11.99 uMActivity at 19.37 uMActivity at 31.37 uMActivity at 60.11 uMActivity at 107.2 uMActivity at 158.4 uMActivity at 229.0 uMCompound QC
Inactive40 0 0 0 01.4694-3.5669-6.2352.85861.80421.4694QC'd by "Chem Div"
Inactive40 0 0 0 0-4.26318.22188.081110.2927-3.9947-4.2631QC'd by "Chem Div"
Inactive40 0 0 0 06.03690.3398-2.1048-8.1695-3.68226.0369QC'd by "Chem Div"
Inactive4-2.05651.7294-3.5894-1.2575-0.5402-2.0565QC'd by "Chem Div"
Inactive40 0 0 0 12.31491.00484.6369-1.9963-3.35432.3149QC'd by "Chem Div"
Inactive47.27487.15156.13721.51975.23327.2748QC'd by "Chem Div"
Inactive40 0 0 0 01.006-3.3873-7.786-9.3037-9.17611.006QC'd by "Chem Div"
Inactive40 0 0 0 0-0.0368-9.4458-10.5155-9.0065-12.9141-0.0368QC'd by "Chem Div"
Inactive40 0 0 0 02.6-7.8084-12.3007-2.0954-6.68872.6QC'd by "Chem Div"
Inactive40 0 0 0 0-11.4867-18.9051-17.4955-19.0735-9.6682-11.4867QC'd by "Chem Div"
Inactive40 0 0 0 0-7.5605-17.2173-11.0038-16.5656-22.4025-7.5605QC'd by "Chem Div"
Inactive4-7.5451-1.1939-1.3084-5.8268-5.3206-7.5451QC'd by "Chem Div"
Inactive40 0 0 0 1-5.5852-4.3753-1.0046-3.1641-10.1524-5.5852QC'd by "Chem Div"
Inactive40 0 0 0 01.1172-6.03917.01189.04461.65331.1172QC'd by "Chem Div"
Inactive42.33591.25181.6626-0.9325-0.91942.3359QC'd by "Chem Div"
Inactive40 0 0 0-19.53540.3984-4.11472.1883-19.5354QC'd by "Chem Div"
Inactive4-5.6552-4.6769-1.9378-0.5867-3.224-5.6552QC'd by "Chem Div"
Inactive4-11.3738-10.4148-13.8912-10.4252-7.8961-11.3738QC'd by "Chem Div"
Inactive4-6.1571-8.7102-2.9113-5.2229-3.4369-6.1571QC'd by "Chem Div"
Inactive40 0 0 0 1-7.3803-8.8177-11.1654-6.5301-15.9483-7.3803QC'd by "Chem Div"
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: Abeta-p1
Protocol: Two and a half microliter / well of yeast growth medium were dispensed in a 1536 assay plate. Compounds were pinned using the Kalypsys robotic system followed by addition of 2.5 uL / well yeast solution. The assay plates were incubated at 30 C. After 48 hr, the absorbance signal at 600 nm was obtained using the PerkinElmer ViewLux plate reader to assess yeast growth. The data was normalized to the positive control of an equimolar mixture of ferric chloride (FeCl3) and clioquinol and to the negative control DMSO.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent activators are ranked higher than compounds that showed apparent inhibition.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = 1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == 1.2 || ratio.curve_class == 2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds also have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.369 uMActivity at 1.840 uMActivity at 9.220 uMActivity at 46.10 uMCompound QC
Inactive04-18.6503-13.1477-13.8495-10.193-18.6503QC'd by ChemBridge
Inactive045.976815.79719.529112.2975.9768QC'd by ChemBridge
Inactive04-2.2605-6.3776-7.2549-8.6562-2.2605QC'd by ChemBridge
Inactive0-5.653.51170.929-4.6686.540 0 0 0-2.74516.59232.4824-6.39-2.7451QC'd by ChemBridge
Inactive0-4.854.50450.99980-21.429641 0 0 00-31.445-21.608-18.85410QC'd by DPISMR
Inactive0-5.551.62590.9999-23.1676-0.905140 0 0 0-23.0563-1.5876-8.4216-20.3934-23.0563QC'd by ChemBridge
Inactive0-5.053.92950.382601240 0 0 117.93357.344317.13735.610217.9335QC'd by ChemBridge
Inactive0-4.854.0950.71878.5-3.061540 0 0 08.36541.0162-7.5512-1.37648.3654QC'd by ChemBridge
Inactive0-5.851.82650.993917240 0 0 016.35573.318110.880716.960516.3557QC'd by ChemBridge
Inactive0411.71246.8311.38612.22511.7124QC'd by ChemBridge
Inactive040.72381.33683.14394.06220.7238QC'd by Life Chemicals
Inactive0-5.60.910.99872-14.030140 0 0 01.157-11.6917-6.9414-1.95941.157QC'd by Life Chemicals
Inactive04-14.5304-9.6974-9.9315-8.9501-14.5304QC'd by Life Chemicals
Inactive043.85064.89091.31960.69263.8506QC'd by Life Chemicals
Inactive043.62739.24846.21077.55993.6273QC'd by Life Chemicals
Inactive045.49833.01122.19870.26495.4983QC'd by Life Chemicals
Inactive040.3801-0.8056-3.8566-3.96840.3801QC'd by Life Chemicals
Inactive0-4.52.33320.986-34.8622-18.171240 0 0 0-29.8852-18.8677-17.226-19.1089-29.8852QC'd by Life Chemicals
Inactive042.92468.9514.91493.38922.9246QC'd by Life Chemicals
Inactive0-4.954.0950.96878-9.793440 0 0 07.6704-11.4945-7.996-3.66127.6704QC'd by ChemBridge
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:thioredoxin reductase [Rattus norvegicus]
External ID: TRXR100
Protocol: Assay protocol: 2 uL of reagents (buffer in column 4 as negative control and 90 nM rTrxR1 in columns 1-3 and 5-48) were dispensed into Greiner black solid-bottom 1,536-well assay plates, followed by 1 uL of NADPH (400 uM final concentration) to each well. The plates were centrifuged at 1000 rpm for 15 seconds and subsequently incubated for 5 min at room temperature (~22 deg C) to allow for rTrxR1 reduction. Compounds (23 nL) were then transferred via Kalypsys pin tool equipped with 1536-pin array (10 nL slotted pins, V&P Scientific, San Diego, CA). In addition, a duplicate 2-fold serial dilution of the control compounds auranofin, a known gold-based TrxR1 inhibitor, and juglone (5-hydroxy-1,4-naphthoquinone), a natural TrxR1 substrate, were pin-transferred to columns 2 and 3, respectively. After incubation for 15 min at room temperature (~22 deg C), 1 uL of selenite (400 uM final concentration) were dispensed to each well. The plate was immediately transferred to a ViewLux high-throughput CCD imager (PerkinElmer), wherein kinetic measurements of NADPH fluorescence (Ex 340 nm, Em 450 nm) were acquired (8 minute kinetic read, see Table 1). Read 1 was utilized to assess the capacity of a compound to serve as an rTrxR1 substrate, i.e. a decrease in NADPH fluorescence compared to the no-compound background is an indication of a substrate behavior for that particular compound. For inhibitory activity of a compound, delta values, computed as the difference in fluorescence intensity between the first and last reads of an 8-minute time kinetic window, were used. All reagents were diluted in an assay buffer consisting of 50 mM Tris-HCl, pH 7.5, 2 mM EDTA, and 0.01% Tween-20.

Throughout the screen, reagent bottle and all liquid lines were made light-tight to minimize reagent degradation. All screening operations were performed on a fully integrated robotic system (Kalypsys, San Diego, CA) containing one RX-130 and two RX-90 anthropomorphic robotic arms (Staubli, Duncan, SC). Library plates were screened starting from the lowest and proceeding to the highest concentration, and a 'double-pinning' step of the highest concentration was required to access higher concentrations of compounds. Vehicle-only plates, with DMSO being pin-transferred to the columns 5-48, were inserted uniformly at the beginning and the end of each library in order to monitor and record any shifts in the background, which can be affected by reagent dispensers or loss in enzyme activity over time. Screening data were corrected, normalized, and concentration-effect relationships were derived by using publicly-available curve fitting algorithms developed in-house (http://ncgc.nih.gov/pub/openhts).
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.

2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00366 uMActivity at 0.018 uMActivity at 0.023 uMActivity at 0.046 uMActivity at 0.073 uMActivity at 0.091 uMActivity at 0.165 uMActivity at 0.229 uMActivity at 0.457 uMActivity at 0.575 uMActivity at 0.940 uMActivity at 1.600 uMActivity at 2.289 uMActivity at 3.140 uMActivity at 4.699 uMActivity at 9.139 uMActivity at 11.40 uMActivity at 21.25 uMActivity at 28.60 uMActivity at 57.06 uMActivity at 80.69 uMActivity at 114.0 uMActivity at 162.0 uMActivity at 229.0 uMCompound QC
Inactive40 0 0 0 0 0-8.53574.3179-3.078218.20441.4021-0.6071-8.5357QC'd by "Asinex Ltd."
Inhibitor14.125494.1071Partial curve; partial efficacy-4.8510.9973-87.10717-2.20 0 0 0 0-69.13267.67153.9436-8.8651-33.8049-69.1326QC'd by "Asinex Ltd."
Inactive40 0 0 0 120.214423.2666.5523.98665.684720.2144QC'd by "Asinex Ltd."
Inactive40 0 0 0-2.434528.6217.595528.0695-2.4345QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 1-7.2095-7.735-9.4851-7.98121.2883-3.8441-7.2095QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 01.10243.00585.11918.562210.09352.8321.1024QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 0-16.916816.733920.466617.039614.98343.2447-16.9168QC'd by "Asinex Ltd."
Inactive40 0 0 0 016.953.651810.700612.160917.923916.95QC'd by "Asinex Ltd."
Inactive47.83587.23477.1972-0.99415.73765.37157.8358QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-0.78149.89919.35416.63937.5499-0.7814QC'd by "Asinex Ltd."
Inactive40 0 0 0 120.476721.53514.991212.943922.639120.4767QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-11.37245.1415-7.4919-12.7916-0.0848-11.3724QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 0-4.73344.063716.947420.368612.983914.7116-4.7334QC'd by "Asinex Ltd."
Inactive45.303513.9672-6.20068.7377.44159.30535.3035QC'd by "Asinex Ltd."
Inactive413.734115.38238.816212.893614.076613.7341QC'd by "Asinex Ltd."
Inhibitor25.118970.1972Single point of activity-4.61.64360.9919-61.69728.5-30 0 0 0 0-47.434110.32869.74593.6414-5.394-47.4341QC'd by "Asinex Ltd."
Inactive43.48442.43732.78442.02692.78233.4844QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 11.62676.04552.25593.90257.0096-5.30151.6267QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 0-35.82349.26788.562721.11442.8518-2.6144-35.8234QC'd by "Asinex Ltd."
Inactive41 0 0 0 0 0-8.421932.42926.16398.859110.323711.673-8.4219QC'd by "Asinex Ltd."
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:ICCB-Longwood/NSRB Screening Facility, Harvard Medical School 靶标:Chain A, Poliovirus Polymerase With Gtp
External ID: HMS750
Protocol: The stalled elongation complex used as a substrate in the screening assay was generated by pre-incubating 600 nM 3Dpol with 12 nM 5' fluorescein labeled 8-6 PETE RNA and 240 nM ATP for 30 minutes at room temperature in 50 mM HEPES, pH 7.0, 40 mM NaCl, 1.5 mM magnesium acetate, 60 microM ZnCl2, 4 mM DTT, and 0.1% Igepal detergent. This solution was dispensed into 384-well microplates (Corning 3710) at a volume of 25 microL/well. Experimental compounds were added by robotic pin transfer at 100 nL/well.

After an incubation time of ~60 min, the total fluorescence and fluorescence polarization signals from the labeled RNA were measured with Perkin Elmer EnVision microplate readers. This first reading provided data indicating whether compounds interfered with RNA binding to the stalled elongation complex. Polymerase elongation activity was then tested by adding 5 microL of a solution containing GTP, CTP, and UTP at 1.2 microM each, resulting in a final concentration of 200 nM for each of the four NTPs and 16.7 microg/ml for the compounds. This allowed for elongation to the end of the RNA template, and assay data were obtained with a second reading done after an incubation period of ~60 min, which is four times longer than the ~15 min needed for elongation under non-inhibited conditions.
Comment: Potential inhibitors were identified using a correlation plot combining standard Z-scores with an elongation efficiency measurement. A Z-score for each compound was calculated by the normal method of Z=(FPcompound-FPplate_mean)/StdDevplate_mean. An elongation efficiency value (FP %Elongation) was then calculated as E=(FPcompound-FPpositive)/(FPnegative-FPpositive), which reflects how the FP signal obtained in the presence of a compound compared to those of the unelongated positive controls (FPpositive) and fully elongated negative controls (FPnegative). Compounds that gave a FP signal greater than the starting material but less than the fully elongated controls thus had E values between 0% and 100%, while compounds that caused the RNA to dissociate from 3Dpol had negative E values due to the FP value associated with free RNA being lower than the unelongated FPpositive value. Finally, the elongation reaction also results in an increase in the total fluorescence intensity due to deprotonation of the fluorescein as it approaches the positively charged polymerase surface, providing an additional assessment of elongation. Compounds that resulted in total fluorescence %Elongation higher than that of the fully elongated control samples were rejected from the analysis. Positives were defined as having experimental FP Z-scores < -0.5 and FP %Elongation < 90%. Activity scores were calculated based on FP %Elongation. FP %Elongation <= 0 was scored as 100 for activity; FP %Elongation >= 100 was scored as 0 for activity. FP %Elongation values between 0 and 100 were subtracted from 100 to generate activity scores.
Fluorescence PolarizationTotal IntensityZ-score_FPZ-score_Total Intensity% Elongation_FP% Elongation_Total IntensityFluorogenic
256.736080052-0.10.3102113
255.736170657-0.30.3101113
256.935420114-0.1-0.3102107
255.235741699-0.40100110
257.5352271250-0.5103105
256.635252352-0.2-0.5102105
259358490650.30.1105111
261359033110.70.1107111
259.7359711690.50.2106112
260.5362367040.60.4107114
257.43614408900.3103113
260.7361582050.60.3107113
260.4362549810.60.4107114
261.8367999010.90.9108119
257.7364981250.10.6103116
255.935232080-0.3-0.5101105
256.835726936-0.10102110
257.9363782270.10.5104115
258.7363095110.30.5105115
256.836098037-0.10.3102113
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: GALC001
Protocol: 1)#Cell lines:
2)#Two cell lines were established for the assay: 145M-Twi-hGALC-G270D (brain-derived Twitcher cell line stably expressing human GALC-G270D) and 145M-Twi-hGALC-WT (same 145M-Twi stably expressing human GALC wild type). The Twitcher is the murine C57B/6 model for GLD with naturally occurring homozygous nonsense GALC mutation. The 145M-Twi cell line was established at Maegawa lab (Ribbens J et al 2014).
3)#Solutions:
a.#Media: DMEM/F12 (1:1) with 10% fetal bovine-serum (FBS) with penicillin/streptomycin (PS-1X - 100 I.U./mL of penicillin+100 ug/mL of streptomycin).
b.#The 6-Hexadecanoylamino-4-methylumbelliferyl-b-D-galactoside (HMU-B-gal) substrate was prepared as per Wiederschain et al 1992. Using 20-mL borosilicate tubes, 2.20 mg of HMU-b-Gal was added in each tube to prepare substrate-film with a final air-nitrogen stream evaporation to remove all diluent solvents.
c.#The HMUb-Gal substrate buffer consists of 0.2 M Na2HPO4 (sodium phosphate dibasic)/ 0.1 M Citric Acid with the pH adjusted to 5.2 using HCl. Sodium Azide at 0.02% and and Sodium Taurocholate (NaTC) at 1 mg/mL were added to this substrate buffer.
d.#The HMU-b-Gal stopping buffer consist of 0.5 M NaHCO3 (sodium bicarbonate) /0.5 M Na2CO3 (sodium carbonate). The pH was adjusted to 10.7 using NaOH. Triton X-100 at 0.25% was added.
4)#Preparation of HMU-b-Gal substrate tubes
Adding 18.6 mL of the HMUb-Gal substrate buffer to each 20-mL tube (2.20 mg of HMU-b-Gal) will reach a concentration of 0.2 mM. Vortex well the tube until the solution is fully homogenized (clear cloudy solution). The final concentration of HMU-B-gal in each well of 1,536-well plate will be 0.1 mM HMU-B-gal. One tube is sufficient for preparation of three 1,536-well plates. Reconstitute the HMU-b-Gal substrate-film with the substrate buffer immediately before loading the 1,536 plates with this solution.
5)#Grow up both cell lines in T175 cm2 flask with 30-40 mL non-phenol red DMEM/F12+10%FBS
6)#The 145M-Twi-hGALC-WT cells become confluent in T175 flasks in ~ 24 hours; 145M-Twi-hGALC-G270D cells become confluent in ~ 72 hours (3 days-4 days). Split 145M-Twi-hGALC-WT cells in order to not overcrowd the flask. 145M-Twi-hGALC-WT cells become sticky and hard to dissociate when over confluent.
7)#Using an automatic cell counter, count and prepare a media-solution containing 750 cells/uL, so that 1500 cells can be dispensed per well in DMEM/F12 + 10% FBS media with PS-1X.
8)#1,526-well clear-bottom tissue culture treated plates will be used. #
a.#Add 2 uL of DMEM/F12 + 10% FBS Media Only to Column 1.
b.#Add 2 uL 145M-Twi-hGALC-WT cells at 750 cells/uL to Columns 2,3
c.#Add 2 uL 145M-Twi-hGALC-G270D cells at 750 cells/uL to Columns 4-48 (~1% final of DMSO). Do not add DMSO if pinning with compound plates that have DMSO in sample field wells.
9)#Using "Cell" Pin Protocol, dispense the compounds from the plate-library selected for the screen. Adjust the cell pin protocol to avoid to touch the bottom of the 1,536-well plates containing the cells to be treated.
10)#Incubate plates in 37 deg C Tissue Culture Incubator for 48 hours
11)#After 48 hour incubation; Add 2 uL of HMU-B-gal substrate with the freshly reconstituted substrate-film.
12)#Incubate at 37 deg C Tissue Culture Incubator for 17 hours
13)#After 17 hours, add 6 uL/well of HMU-b-Gal Stopping Buffer.
14) Read plates on ViewLux; Use ViewLux #1 Fluorescence Protocol: 1536 Blue Ex 405 Em 450
Comment:
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00460 uMActivity at 0.023 uMActivity at 0.046 uMActivity at 0.092 uMActivity at 0.114 uMActivity at 0.230 uMActivity at 0.460 uMActivity at 0.911 uMActivity at 1.047 uMActivity at 1.771 uMActivity at 2.301 uMActivity at 4.634 uMActivity at 5.773 uMActivity at 11.50 uMActivity at 16.40 uMActivity at 23.82 uMActivity at 35.99 uMActivity at 57.50 uMActivity at 114.4 uMActivity at 129.1 uMActivity at 273.4 uMActivity at 288.0 uMCompound QC
Inactive0-62.90230.9997-6.2199-22.948440 0 0 1-15.1871-22.8737-13.0463-6.4332-15.1871QC'd by Sytravon
Inactive0-6.650.90.7402-5.4008-33.918940 0 0 0-2.834-24.9324-8.4029-13.6302-2.834QC'd by Sytravon
Inactive0004-4.1352-33.2372-9.3478-12.8263-4.1352QC'd by Sytravon
Activator39.81071177.638110Single point of activity-4.44.44950.99991187.49579.857630 0 0994.552513.68638.7931994.5525QC'd by Sytravon
Activator25.1189856.794744Partial curve; high efficacy-4.62.18761854.9919-1.80292.10 0 0734.5291-1.5024129.7347734.5291QC'd by Sytravon
Activator39.8107909.876110Single point of activity-4.44.44951913.68053.804330 0 0765.22654.35946.0555765.2265QC'd by Sytravon
Activator39.81071167.752310Single point of activity-4.44.449511156.7417-11.010630 0 0968.7954-8.2968-9.1755968.7954QC'd by Sytravon
Inactive0-4.81.22210.9997-16.0914-2.466540 0 0-13.8261-2.8887-7.9138-13.8261QC'd by Sytravon
Inhibitor0.316228.84270Complete curve; partial efficacy-6.51.211-35.2116-6.369-1.20 0 0 1-16.8972-12.8075-30.2353-34.8348-16.8972QC'd by Sytravon
Inactive0-5.054.0950.9993-20.1137240 0 0-20.51142.0778-14.2469-20.5114QC'd by Sytravon
Inactive0-5.32.18761-12.83291740 0 0-12.777515.8521-8.7115-12.7775QC'd by Sytravon
Inactive0-5.054.0950.9981-17.0037240 0 0-17.50312.1077-11.7225-17.5031QC'd by Sytravon
Inactive0-4.92.18760.9999-26.0949-0.770840 0 0-25.0791-1.059-12.1795-25.0791QC'd by Sytravon
Inactive0-4.44.95490.3882.5-5.816340 0 01.5002-0.5325-11.51361.5002QC'd by Sytravon
Inactive0004-4.6931-2.6669-8.9116-4.6931QC'd by Sytravon
Inactive0004-2.5954-3.9778-8.3431-8.3846-2.5954QC'd by Sytravon
Inactive0-6.43.06540.865410.5-7.398140 0 0 06.4631-6.99849.814714.8786.4631QC'd by Sytravon
Inactive0004-13.1925-10.9583-7.0337-9.977-13.1925QC'd by Sytravon
Inactive0-6.74.95490.9864-3.5338-20.242640 0 0 1-12.6231-19.3688-2.5282-4.667-12.6231QC'd by Sytravon
Inactive0-6.754.95490.98689.5-8.608440 0 0 10.0118-6.75710.6588.48880.0118QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:N/A
External ID: SMAD3201
Protocol: Suspensions of trypsinized HEPG2 CAGA-GFP cells were dispensed into white, tissue culture-treated, solid 1536-well plates at 5uL/well (1000 cells/well final concentration) in DMEM medium supplemented with 1% FBS. Plates were incubated at 37 degrees C for 2 hours, after which 23 nL of compounds or DMSO were delivered to each well using a pin tool. One uL of recombinant TGF-beta in DMEM (1% FBS) was then dispensed (500 pg/mL final concentration), and plates were incubated at 37 degrees C for 18 hours. Two uL of CellTiter Glo (Promega), a luminescence-based viability reagent, was dispensed, followed by a 10 minute room temperature incubation. The plates were then measured on a PerkinElmer ViewLux plate reader for luminescence (clear filter) using a 5 second exposure. The %Activity was determined from the corrected luminescence values. Wells containing media only (no cells) were used to normalize %Activity of identified toxic compounds; media-only wells corresponded to 100%Activity (complete cell-killing), while DMSO-dosed cell controls were used to normalize 0%Activity (no toxicity).

Concentration-response curves were fitted to the signals arising from the resulting luminescence. The concentration-effect curves were then classified based on curve quality (r2), response magnitude and degree of measured activity, and compounds were subsequently categorized based on their curve class. Toxic compounds showed concentration-dependent decreases in luminescence, concordant with a decrease in intracellular ATP concentration (CellTiter Glo's marker of viability), and thus a decrease in the number of viable cells. Inactive (non-toxic) compounds showed no effect on luminescence signal. Active (toxic) compounds showed concentration dependent decrease in luminescence.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description".

2. For all inactive (non-toxic) compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active (toxic) compounds, a score range was given for each curve class type given above. Active (toxic) compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.018 uMActivity at 0.037 uMActivity at 0.074 uMActivity at 0.164 uMActivity at 0.369 uMActivity at 0.461 uMActivity at 0.737 uMActivity at 0.922 uMActivity at 1.840 uMActivity at 2.300 uMActivity at 3.690 uMActivity at 4.610 uMActivity at 9.233 uMActivity at 20.57 uMActivity at 46.10 uMActivity at 92.20 uMCompound QC
Inactive40 0 0 0 00.259610.7694.1255-1.6909-0.74870.2596QC'd by "Chem Div"
Inactive40 0 0 0 0-0.8876-5.2018-3.67070.33032.9155-0.8876QC'd by "Chem Div"
Inactive40 0 0 0 0-4.2306-10.0984-0.7957-0.93222.0609-4.2306QC'd by "Chem Div"
Inactive45.8218-1.6618-3.05539.7773-4.1735.8218QC'd by "Chem Div"
Inactive4-3.265111.605-17.88485.978514.3087-3.2651QC'd by "Chem Div"
Inactive40 0 0 0 0-7.2413.20083.9728-4.51213.9811-7.241QC'd by "Chem Div"
Inactive40 0 0 0 0-9.8078.98690.34840.37287.0197-9.807QC'd by "Chem Div"
Cytotoxic17.782835.5846Partial curve; partial efficacy-4.752.30310.9974-42.6167-7.0321-2.20 0 0 0 0-39.1036-6.2767-6.4175-8.2439-13.6777-39.1036QC'd by "Chem Div"
Cytotoxic3.548140.0619Single point of activity-5.454.95490.8999-40.3659-0.3039-30 0 0 0 12.6367-8.3337.8061-1.7484-40.23322.6367QC'd by "Chem Div"
Inactive40 0 0 0 10.54241.65919.664714.274915.58960.5424QC'd by "Chem Div"
Inactive40 0 0 0 05.9628-8.298-2.31046.1361-3.44285.9628QC'd by "Chem Div"
Inactive40 0 0 0 0-1.0151-4.6247-5.8885-4.492-0.7127-1.0151QC'd by "Chem Div"
Inactive4-0.9022-1.288913.9053-1.0794.3101-0.9022QC'd by "Chem Div"
Inactive40 0 0 0 0-23.5202-1.57517.1469-12.67219.6037-23.5202QC'd by "Chem Div"
Inactive40 0 0 0 1-0.075-0.6173-0.87325.1352.1913-0.075QC'd by "Chem Div"
Cytotoxic35.481333.3813Single point of activity-4.454.95490.4913-37.3813-4-30 0 0 0 0-30.3178-0.6381-23.6633-3.83866.0591-30.3178QC'd by "Chem Div"
Inactive40 0 0 0 0-17.4140.1464-4.8771-5.0687-7.6162-17.414QC'd by "Chem Div"
Inactive4-4.6673-7.1501-3.3264-4.1232-3.249-4.6673QC'd by "Chem Div"
Inactive40 0 0 0 0-17.38786.57262.9374-7.8375-3.1433-17.3878QC'd by "Chem Div"
Inactive40 0 0 0 1-10.2269-7.0609-5.5812-5.82172.0518-10.2269QC'd by "Chem Div"
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:flap endonuclease 1 [Homo sapiens]
External ID: FEN1001
Protocol: Three uL of reagents (buffer in column 3 and 4 as negative control and 10 nM FEN1 in columns 1, 2, and 5-48) were dispensed into 1,536-well black solid-bottomed plate. Compounds (23 nL) were transferred via Kalypsys pin tool equipped with 1536-pin array (10 nL slotted pins, V&P Scientific, San Diego, CA). The plates were then incubated for 15 min at room temperature, and 1 uL substrate (50 nM final concentration) were added to start the reaction read twice at 0 min read and 15 min on ViewLux reader. Throughout the screen, reagent bottle and all liquid lines were chilled and made light-tight to minimize reagent degradation. All screening operations were performed on a fully integrated robotic system (Kalypsys, San Diego, CA) containing one RX-130 and two RX-90 anthropomorphic robotic arms (Staubli, Duncan, SC). Library plates were screened starting from the lowest and proceeding to the highest concentration, and a "double-dipping" step of the highest concentration was required to access higher concentrations of compounds. Vehicle-only plates, with DMSO being pin-transferred to the entire column 5-48 compound area, were inserted uniformly at the beginning and the end of each library in order to monitor for and record any shifts in the background, which can be affected by reagent dispensers or loss in enzyme activity overtime. Screening data was corrected, normalized, and concentration-effect relationships were derived by using publicly-available curve fitting algorithms developed in-house (http://ncgc.nih.gov/pub/openhts). A four parameter Hill equation was fitted to the concentration-response data by minimizing the residual error between the modeled and observed responses.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.

2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00366 uMActivity at 0.018 uMActivity at 0.091 uMActivity at 0.229 uMActivity at 0.457 uMActivity at 0.575 uMActivity at 0.943 uMActivity at 1.600 uMActivity at 2.289 uMActivity at 3.140 uMActivity at 4.718 uMActivity at 9.139 uMActivity at 11.40 uMActivity at 21.05 uMActivity at 28.60 uMActivity at 57.06 uMActivity at 80.69 uMActivity at 114.0 uMActivity at 162.0 uMActivity at 229.0 uMCompound QC
Inactive40 0 0 0 0-0.2266.47460.9204-0.53720.8592-0.226QC'd by "Asinex Ltd."
Inactive40 0 0 0 012.8562-1.8356-5.6647-0.017-0.555812.8562QC'd by "Asinex Ltd."
Inactive40 0 0 0 012.5006-1.9757-2.1008-2.1909-3.930112.5006QC'd by "Asinex Ltd."
Inactive40 0 0 0 02.0579-4.4772-3.3361-4.7626-5.20192.0579QC'd by "Asinex Ltd."
Inactive40 0 0 0 04.1372-0.9471-3.1539-7.212-6.49254.1372QC'd by "Asinex Ltd."
Inactive4-2.6054-9.932-7.5404-0.2177-8.4216-2.6054QC'd by "Asinex Ltd."
Inactive40 0 0 0 1-3.0398-2.9765-4.4925-0.70022.9936-3.0398QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-3.0743.8881.29850.6146-0.3069-3.074QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-9.7692-4.4338-3.3244-6.5932-4.4097-9.7692QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 06.2922-3.5076-1.50832.72397.20095.37566.2922QC'd by "Asinex Ltd."
Inactive4-0.2544-0.2233-1.1943-3.5748-3.6048-2.2861-0.2544QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-1.598814.23582.5885.30382.9078-1.5988QC'd by "Asinex Ltd."
Inactive4-3.7605-2.8611.50782.00070.948-2.2965-3.7605QC'd by "Asinex Ltd."
Inactive45.9825.56784.29289.29046.06884.45635.982QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 06.83532.5813-3.1437-3.63122.551311.39676.8353QC'd by "Asinex Ltd."
Inactive40 0 0 0 0 0-2.34097.0392-3.5682-1.76925.9909-2.9248-2.3409QC'd by "Asinex Ltd."
Inactive40 0 0 0 10.4459-0.2996-0.8455-0.19018.9870.4459QC'd by "Asinex Ltd."
Inactive41.15845.92014.3416-2.2202-2.32436.64411.1584QC'd by "Asinex Ltd."
Inactive46.78434.88054.88243.9914.41476.7843QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-15.76641.542.18773.25919.3946-15.7664QC'd by "Asinex Ltd."
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:N/A
External ID: cmt1a-sytravon-dr-C9F2sN-via
Protocol: Cell viability assay in S16 Pmp22-F2sN cells
PROTOCOL TABLE (format as described by Inglese J, Shamu CE and Guy RK. 2007)
SEQUENCE No. (e.g., 1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE and DESCRIPTION.

1. Cells. Add 500-1,000 cells in 4 uL in growth media (DMEM High Glucose, No Phenol Red media + 10% heat-inactivated FBS + 1% Pen/Strep supplemented media) per well into Greiner 1536-well white/solid bottom high base, TC-treated plates.
2. Compounds. Library compounds and controls added at 23nL per well, transferred by Pin Tool.
3. Incubation. Incubate plates at 37C, 5% CO2, 95% RH for 24 h.
4. Reagent. Add 3uL CellTiter-Glo per well of Greiner 1536-well plates.
5. Incubation. Incubate plates at room temperature for 15 min., protect from light.
6. Detector. FLuc luminescence measured using CCD-based camera (Viewlux).

NOTES (numbers refer to Sequence numbers above; values are from representative experiments)
6. Luminescence Read: Clear filter; Exposure = 1 sec, Gain = High, Speed = Slow, Binning = 2X

REFERENCES:
1. Inglese J, Shamu CE and Guy RK, Reporting data from high throughput screening of small molecule libraries, Nature Chemical Biology, 2007, 3(8): 438-441. doi.org/10.1038/nchembio0807-438
2. Yasgar A, Shinn P, Jadhav A, Auld DS, Michael S, Zheng W, Austin CP, Inglese J and Simeonov A, Compound Management for Quantitative High-Throughput Screening. J. Assoc. Lab. Auto., 2008, 13: 79-89. doi: 10.1016/j.jala.2007.12.004
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent cytotoxic compounds are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all cytotoxic compounds, a score range was given for each curve class type given above. Cytotoxic compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis Commentactivity-Activity_Scoreactivity-Curve_Descriptionactivity-Fit_LogAC50activity-Fit_HillSlopeactivity-Fit_R2activity-Fit_InfiniteActivityactivity-Fit_ZeroActivityactivity-Fit_CurveClassactivity-Excluded_Pointsactivity-Max_Responseactivity-Activity at 0.011 uMactivity-Activity at 0.113 uMactivity-Activity at 1.140 uMactivity-Activity at 11.50 uMactivity-Activity at 57.50 uMCompound QC
Cytotoxic4.4668119.000785Complete curve; high efficacy-5.354.95490.9999-112.43076.5699-1.10 0 0 0 0-112.20636.51065.8557.2471-111.6796-112.2063QC'd by Sytravon
Cytotoxic2.8184101.393185Complete curve; high efficacy-5.554.0950.9998-98.81052.5825-1.10 0 0 0 0-99.80863.49291.81350.1929-97.9785-99.8086QC'd by Sytravon
Cytotoxic3.1623101.963485Complete curve; high efficacy-5.54.0950.9999-100.42761.5359-1.10 0 0 0 0-100.22712.1630.95550.0213-99.9453-100.2271QC'd by Sytravon
Cytotoxic2.8184107.851785Complete curve; high efficacy-5.554.0951-103.51384.3379-1.10 0 0 0 0-103.92954.51773.79531.9466-103.1019-103.9295QC'd by Sytravon
Cytotoxic4.4668118.201485Complete curve; high efficacy-5.354.44950.9999-114.03924.1622-1.10 0 0 0 0-113.81164.10943.3255.1082-112.6974-113.8116QC'd by Sytravon
Cytotoxic6.3096105.397684Complete curve; high efficacy-5.24.95490.9959-103.73041.6672-1.10 0 0 0 0-103.5234-2.27240.43847.6226-99.3352-103.5234QC'd by Sytravon
Cytotoxic6.3096101.479484Complete curve; high efficacy-5.23.51170.9998-101.9915-0.5121-1.10 0 0 0 0-102.4011-1.53730.0096-0.3452-90.968-102.4011QC'd by Sytravon
Cytotoxic7.9433102.589683Complete curve; high efficacy-5.14.50451-101.05271.5368-1.10 0 0 0 0-100.8510.90061.60371.4302-84.9187-100.851QC'd by Sytravon
Cytotoxic3.162370.297163Complete curve; partial efficacy-5.54.95490.9828-69.70490.5922-1.20 0 0 0 0-63.43213.387-3.46871.565-75.6911-63.4321QC'd by Sytravon
Cytotoxic14.125495.806642Partial curve; high efficacy-4.852.04790.9978-95.22240.5841-2.10 0 0 0 0-90.688-0.62073.4708-1.7573-36.6682-90.688QC'd by Sytravon
Cytotoxic11.2202112.913942Partial curve; high efficacy-4.951.71370.9958-104.61698.297-2.10 0 0 0 0-97.955912.67123.83816.1282-49.5999-97.9559QC'd by Sytravon
Cytotoxic1069.044842Partial curve; partial efficacy-53.990.9749-62.54486.5-2.20 0 0 0 0-62.329.111-1.680212.1821-37.3237-62.32QC'd by Sytravon
Cytotoxic11.220280.156442Partial curve; partial efficacy-4.951.24750.999-73.15647-2.20 0 0 0 0-63.88036.09288.38222.1812-33.2986-63.8803QC'd by Sytravon
Cytotoxic12.5893125.204542Partial curve; high efficacy-4.91.34370.9989-120.66364.5408-2.10 0 0 0 0-106.97133.83516.5495-1.8934-52.8187-106.9713QC'd by Sytravon
Cytotoxic12.5893111.801842Partial curve; high efficacy-4.92.18760.9982-109.03742.7644-2.10 0 0 0 0-105.04570.54762.7665.5294-48.2674-105.0457QC'd by Sytravon
Cytotoxic12.5893115.128142Partial curve; high efficacy-4.92.40640.9871-114.52180.6063-2.10 0 0 0 0-111.6197-2.5136-5.00949.6428-50.5839-111.6197QC'd by Sytravon
Cytotoxic1066.735742Partial curve; partial efficacy-51.59360.9998-66.03780.6978-2.20 0 0 0 0-62.31390.7080.4832-1.6017-35.5891-62.3139QC'd by Sytravon
Cytotoxic12.589384.389342Partial curve; high efficacy-4.92.40640.9981-82.25822.1311-2.10 0 0 0 0-80.3317-0.55473.35693.0162-35.6994-80.3317QC'd by Sytravon
Cytotoxic25.1189104.756941Partial curve; partial efficacy-4.61.34370.9947-102.60412.1527-2.20 0 0 0 0-77.73040.6295.7425-1.9802-23.6366-77.7304QC'd by Sytravon
Cytotoxic19.9526122.610141Partial curve; high efficacy-4.72.12110.9971-120.32182.2883-2.10 0 0 0 0-108.3986.0184-1.28882.1585-26.8214-108.398QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:N/A
External ID: LDHA
Protocol: The assay was optimized to 1536-well plates. Briefly, 3 muL of human lactate dehydrogenase 5 (#A38558H, Meridian Life Science, Inc., Memphis, TN) in LDH assay buffer (200 mM Tris HCl pH 7.4, 100 microM EDTA and 0.01% Tween-20) was added to a black solid bottom 1536-well assay plate (Greiner Bio-One) using a BioRAPTR FRD dispenser (Beckman Coulter, Brea, CA). A 1536-well pintool dispenser outfitted with 20 nL pins (Wako Automation, San Diego, CA) was used to transfer 23 nL of DMSO-solubilized compound (both library and vehicle controls) to each 1536-well assay plate. Following compound transfer, 1 muL of substrate solution containing NADH and sodium pyruvate (Sigma-Aldrich, St. Louis, MO) in LDH assay buffer was dispensed via BioRAPTR FRD to initiate the reaction. Final concentrations in the 4 microL reaction volume were 2 nM LDHA enzyme, 0.06 mM NADH and 0.2 mM sodium pyruvate. Following a 5 minute incubation period at room temperature, 1 muL of detection reagent (C. kluyveri diaphorase (Sigma-Aldrich) and resazurin sodium salt (Sigma-Aldrich) in LDH assay buffer) was added to a total volume of 5 muL. Final concentrations of detection reagents were 0.133 mg/mL diaphorase and 37 muM resazurin. Plates were immediately transferred to a ViewLux microplate imager (PerkinElmer, Waltham, MA), and any resulting resorufin fluorescence was measured (ex540, em590 nm) at 0 and 20 minutes. Fluorescence was normalized using enzyme-free and DMSO-treated control wells on each plate.
Comment: PubChem score indicates % inhibition at 229 uM or 114 uM of the compound (Max_response). Active compounds with Max_response greater than -100%, PUBCHEM_ACTIVITY_SCORE is 100. Active compounds with Max_response between -80% and -100%, PUBCHEM_ACTIVITY_SCORE is 80. Active compounds with Max_response between -60% and -80%, PUBCHEM_ACTIVITY_SCORE is 60. Active compounds with Max_response between -30% and -60%, PUBCHEM_ACTIVITY_SCORE is 40. Inconclusive Compounds with Max_response between -25% and -30% have PUBCHEM_ACTIVITY_SCORE 20. For all inactive compounds with Max_response greater than -25%, PUBCHEM_ACTIVITY_SCORE is 0
Max_ResponseActivity at 2.29 uMActivity at 11.40 uMActivity at 57.10 uMActivity at 114.0 uMActivity at 229.0 uMCompound QC
-13.2744-14.0597-11.6112-13.2744QC'd by CBC
-13.2736-2.2436-1.4106-3.5076-4.2706-13.2736QC'd by ChemBridge
-13.2725-6.3492-3.253-0.0584-6.7999-13.2725QC'd by Enamine
-13.2721-2.684-6.1454-14.2744-13.2721-0.8973QC'd by InterBioScreen
-13.26881.98380.4889-13.2688QC'd by CBC
-13.2682-4.48462.9589-5.115-5.7595-13.2682QC'd by Sytravon
-13.2658-0.93-4.4888-3.7077-0.7595-13.2658QC'd by Scripps Research Institute Molecular Screening Center-Florida
-13.2621-10.0397-8.5786-8.5671-13.2621-10.4851QC'd by InterBioScreen
-13.2619-4.902-18.7355-13.2619QC'd by CBC
-13.2616-5.6993-9.4488-8.2485-1.1117-13.2616QC'd by Asinex Ltd.
-13.2589-2.6923-5.6679-1.3754-4.9233-13.2589QC'd by ChemBridge
-13.2586-7.6996-6.7417-9.0608-13.258613.0861QC'd by Chem Div
-13.2584.5885-10.8854-13.258QC'd by CBC
-13.2566-1.7741-2.7236-3.5771-3.8709-13.2566QC'd by Chem Div
-13.255-2.1061.9951-5.3796-7.5294-13.255QC'd by Sytravon
-13.2542-3.8713-0.3776-5.8085-5.7762-13.2542QC'd by Sytravon
-13.2537-9.0401-8.2673-9.7055-13.2537QC'd by ChemBridge
-13.2524-8.3625-5.9151-4.3599-2.4204-13.2524QC'd by Life Chemicals
-13.2524-11.5667-8.9808-13.1831-13.2524-13.0056QC'd by Enamine
-13.252412.60356.6367-13.2524QC'd by CBC
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:N/A
External ID: StopGo1
Protocol: 3000 Hek-293T-WT cells were plated overnight before adding 23 nL of FireFly inhibitors per well using a pintool workstation (Kalypsys) followed by incubation for 4 hr. Luciferase activity was then measured using Amplite Luciferase Reagent.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.00457 uMActivity at 0.023 uMActivity at 0.029 uMActivity at 0.047 uMActivity at 0.084 uMActivity at 0.127 uMActivity at 0.212 uMActivity at 0.303 uMActivity at 0.463 uMActivity at 0.774 uMActivity at 1.183 uMActivity at 2.152 uMActivity at 2.856 uMActivity at 4.631 uMActivity at 6.701 uMActivity at 11.26 uMActivity at 16.91 uMActivity at 27.01 uMActivity at 39.83 uMActivity at 57.93 uMActivity at 97.38 uMActivity at 146.4 uMActivity at 210.0 uMActivity at 304.0 uMCompound QC
Inactive04-6.0625-2.3623-0.2802-5.2775-6.0625QC'd by Evotec (US) Inc.
Inhibitor35.481340.773610Single point of activity-4.452.40640.933-44.7736-4-30 0 0 0-35.05580-9.6533-5.4245-35.0558QC'd by Evotec (US) Inc.
Inactive0-5.853.92950.9968-13.4932340 0 0 0-13.15412.8182-11.1738-14.161-13.1541QC'd by UrkORgSynthesis Ltd
Inactive0-5.14.95490.889213.5-3.562340 0 0 1-8.0174-0.4429-6.301911.0739-8.0174QC'd by Evotec (US) Inc.
Inactive04-15.8272-9.3466-13.7699-18.4456-15.8272QC'd by Evotec (US) Inc.
Inactive0-5.72.40640.8108-13.04340.434140 0 0 0-9.5936-0.0549-7.5602-16.7029-9.5936QC'd by Evotec (US) Inc.
Inactive04-11.635-18.2363-13.8009-16.9167-11.635QC'd by Evotec (US) Inc.
Inactive04-12.2857-9.6332-6.6135-15.2325-12.2857QC'd by Evotec (US) Inc.
Activator14.125448.56740Single point of activity-4.851.22210.997536.9973-11.570130 0 0 030.2349-11.1897-5.77248.651130.2349QC'd by Evotec (US) Inc.
Inactive0-6.24.95490.69662-9.596940 0 0 1-6.1109-7.58075.9101-1.5457-6.1109QC'd by Evotec (US) Inc.
Inactive0-5.853.1320.9409-21.4577.540 0 0 0-17.5516.6865-16.2327-25.7975-17.551QC'd by ChemBridge
Inactive04-8.9062-10.0321-8.4923-13.3892-8.9062QC'd by Enamine
Inactive0-4.44.95490.62637.867851.418340 0 0 013.962331.042659.781363.080913.9623QC'd by Asinex Ltd.
Inhibitor19.952638.612510Single point of activity-4.72.33320.9982-39.7401-1.1275-30 0 0 0-36.5455-1.9894-0.5229-9.5594-36.5455QC'd by Evotec (US) Inc.
Inactive0-6.24.95490.9465-11.49182240 0 0 0-6.912316.7569-14.5765-13.2401-6.9123QC'd by ChemBridge
Inactive04-15.3605-14.6287-17.6489-22.4317-15.3605QC'd by Evotec (US) Inc.
Inactive0-5.54.50450.9992-8.294-20.163740 0 0 1-21.4275-20.1364-17.9575-8.5783-21.4275QC'd by Evotec (US) Inc.
Inactive04-15.0697-19.7843-18.2327-16.8712-15.0697QC'd by Evotec (US) Inc.
Inactive0-5.53.990.9996-14.5384240 0 0 1-1.55331.9923-1.6259-14.1987-1.5533QC'd by Asinex Ltd.
Inactive0-4.853.92950.92562.5-10.304640 0 0 02.6164-8.1304-12.3372-6.37372.6164QC'd by Evotec (US) Inc.
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: NTMT1-p-MTaseGlo
Protocol: Materials: NTMT1 enzyme, substrate SPKRIA, control peptide RCC1-6 is provided by the Huang laboratory.

MTaseGlo Assay:
PROTOCOL TABLE
SEQUENCE No. (e.g., 1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE; DESCRIPTION
1; Enzyme; 3 uL; Dispense enzyme mixture (final concentrations of 125 nM NTMT1 and 100 uM SAM) into Greiner 1536-well white / solid bottom assay plate (Greiner Bio One, Monroe, NC).
2; Compounds; 23 nL; Compounds and controls were transferred via a Kalypsys Pin Tool (Wako USA) equipped with a 1536-slotted pin array (Wako Automation, Richmond, VA)
3; Incubation; 15 min; Incubate at room temperature
4; Substrate; 1 uL; Dispense 1 uL of substrate at final concentration of 1 uM. Buffer solution was dispensed in control wells. The assay plate was covered with metal lids.
5; Incubation; 30 min; Incubate at room temperature, protected from lights.
6; Reagent; 1 uL; Dispensed 5x MTase-Glo detection reagent (R) into the assay plate. The plate was covered with metal lids.
7; Incubation; 30 min; Incubate the assay plates at room temperature in the dark to allow for SAH to be converted to ADP.
8; Reagent; 5 uL; Dispense 5 uL of 1x MTase-Glo Detection Solution (R) to allow for ADP to be converted to ATP which was then detected with a luciferase reaction.
9; Centrifuge; 15 sec; Centrifuge the assay plate for 15 seconds at 1000 RPM.
10; Incubation; 30 min; Assay plates were incubation at room temperature in the dark.
11; Detection; Luminescence; Plates were read on ViewLux detector (PerkinElmer). Data were normalized to no-enzyme (0% activity) and no-inhibitor (DMSO; 100%) controls, and the resulting percent inhibition data were fitted to a 4-parameter Hill equation using GraphPad Prism.
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0000420468 uMActivity at 0.0001060182 uMActivity at 0.0001893301 uMActivity at 0.0004489405 uMActivity at 0.0009664426 uMActivity at 0.00171 uMActivity at 0.00292 uMActivity at 0.00536 uMActivity at 0.00931 uMActivity at 0.020 uMActivity at 0.041 uMActivity at 0.085 uMActivity at 0.146 uMActivity at 0.251 uMActivity at 0.501 uMActivity at 1.073 uMActivity at 2.225 uMActivity at 4.221 uMActivity at 6.452 uMActivity at 12.64 uMActivity at 29.84 uMActivity at 57.50 uMActivity at 114.0 uMActivity at 227.6 uMActivity at 379.2 uMActivity at 573.0 uMCompound QC
Inactive0004-8.3336-1.4117-0.6141-1.80790.0446-8.3336QC'd by Sytravon
Inactive0-5.754.95490.364-29.48243.380540 0 0 0 1-1.39543.25350.7839-59.13736.0E-4-1.3954QC'd by Sytravon
Inactive0-6.753.1320.78430.870212.540 0 0 0 04.496310.2975-0.4426-1.35820.16264.4963QC'd by Sytravon
Inactive00042.0548-1.7066-2.8833-2.0050.36932.0548QC'd by Sytravon
Inactive0004-5.64220.4339-3.0268-4.4255-2.8516-5.6422QC'd by Sytravon
Inactive00040.2315-0.9193-0.962513.7196-1.97040.2315QC'd by Sytravon
Inactive0-5.054.95490.5023-0.05257.540 0 0 0 15.3132.711112.72021.5451-0.04385.313QC'd by Sytravon
Inactive00044.3883-3.3207-0.3808-0.1461-2.9714.3883QC'd by Sytravon
Inactive00045.7635-0.6995-1.72946.10241.83175.7635QC'd by Sytravon
Inactive0-4.31.06930.8616-4.25739.540 0 0 0 0-1.881111.14848.55025.98854.608-1.8811QC'd by Sytravon
Inactive0004-1.7273-3.4115-0.1881-2.6331-1.6916-1.7273QC'd by Sytravon
Inactive00044.3895-3.0627-1.10014.78020.86424.3895QC'd by Sytravon
Inactive0-54.95490.664910.50.702140 0 0 0 013.78374.4863-3.58167.22047.367813.7837QC'd by Sytravon
Inactive00046.01793.3436.89312.29364.52246.0179QC'd by Sytravon
Inactive000411.32073.08785.1642.55725.361511.3207QC'd by Sytravon
Inactive00048.73833.26642.73073.24051.84638.7383QC'd by Sytravon
Inactive0-4.052.72020.9497-18.9142-2.292240 0 0 0 0-14.0952-1.0768-4.0059-2.4795-5.6228-14.0952QC'd by Sytravon
Inactive0004-7.7765-2.2569-3.9959-1.34510.1566-7.7765QC'd by Sytravon
Inactive0-44.95490.7054-25.0658-0.540 0 0 0 0-17.5549-2.6051-3.8192-2.69936.0774-17.5549QC'd by Sytravon
Inactive0-5.84.95490.4109-5.3905440 0 0 0 0-2.49043.8042.4492-14.07540.8551-2.4904QC'd by Sytravon
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:FH fumarate hydratase [Homo sapiens (human)]
External ID: FUM001
Protocol: Assay Protocol Summary:

For primary high-throughput screen, 3 ul of FH solution (containing 13.33nM human fumarate hydratase, 13.33IU/ml malic dehydrogenase, 0.2mM NAD, 0.067mg/ml diaphorase and 0.067mM resazurin in the assay buffer (50 mM Tris pH 8.0, 5 mM MgCl2, 0.01% Brij 3) was dispensed into each well in a black solid bottom 1536-well assay plate (Greiner Bio-One) using a BioRAPTR FRD dispenser (Beckman Coulter, Brea, CA). A 1536-well pintool dispenser outfitted with 20 nl pins (Wako Automation, San Diego, CA) was used to transfer 20 nL of DMSO-solubilized compound (Cherrypick plates) to each 1536-well assay plate. Each compound was screened at five concentrations: 15 nM, 151 nM, 1.5 uM, 15.4 uM, 76.9 uM. Following compound transfer, plates were incubated in room temperature for 10 minutes. 1 uL of substrate solution containing fumaric acid (160 uM) was dispensed via BioRAPTR FRD to initiate the reaction. Plates were immediately transferred to a ViewLux microplate imager (PerkinElmer, Waltham, MA), and any resulting resorufin fluorescence was measured (exitation/emission, 525/598 nm) at 0 and 15 minutes. The exposure time is 1 second. Fluorescence from each well was normalized using enzyme-free and DMSO-treated control wells on each plate, and changes in fluorescence (delta RFU) were calculated using the difference in fluorescent signal for each well at 15 minutes versus 0 minutes.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent activators are ranked higher than compounds that showed apparent inhibition.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentActivity_ScoreCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0000077118 uMActivity at 0.0000393017 uMActivity at 0.0000781896 uMActivity at 0.0001700349 uMActivity at 0.0003854776 uMActivity at 0.0008323078 uMActivity at 0.00150 uMActivity at 0.00316 uMActivity at 0.00511 uMActivity at 0.00966 uMActivity at 0.023 uMActivity at 0.050 uMActivity at 0.101 uMActivity at 0.217 uMActivity at 0.414 uMActivity at 0.673 uMActivity at 1.904 uMActivity at 2.793 uMActivity at 6.307 uMActivity at 13.45 uMActivity at 20.56 uMActivity at 53.33 uMActivity at 79.85 uMActivity at 162.3 uMActivity at 288.0 uMCompound QC
Inhibitor39.810753.320210Single point of activity-4.42.58840.9867-48.82024.5-30 0 0 0 0 0 0-40.68358.16034.08673.42765.11961.6393-0.0748-40.6835QC'd by Tocris
Inactive00040.015-0.2175-0.5756-1.11951.4974-1.0976-0.62120.015QC'd by Tocris
Inactive00040.51856.07790.55083.89162.59841.17222.06630.5185QC'd by Tocris
Inactive0004-2.0257-0.374-1.4506-1.3016-1.0656-0.92350.4464-2.0257QC'd by Tocris
Inactive0-4.34.50450.984-19.1975040 0 0 0 0 0 0-16.8312-0.2154-1.25580.97381.1829-0.1066-0.0366-16.8312QC'd by Tocris
Inactive00042.12962.96550.6465-1.98581.5085-0.08872.97092.1296QC'd by Tocris
Inactive0-4.41.85790.925-12.343440 0 0 0 0 0 0-8.61915.77951.93763.81995.45582.78381.8259-8.6191QC'd by Tocris
Inactive0004-2.0918-0.9895-2.4108-0.8469-0.967-2.0746-1.3704-2.0918QC'd by Tocris
Inactive00040.0255-0.62830.01560.1788-0.8044-1.3186-0.71530.0255QC'd by Tocris
Inactive00040.1146-2.8935-5.1856-5.7517-1.454-4.3451-6.17830.1146QC'd by MedChem Express
Inactive00043.8877-1.3858-16.616.97627.2289-13.88265.81453.8877QC'd by APExBIO
Inactive0004-3.262-4.18111.5622-0.0496-1.6578-0.2741-0.8617-3.262QC'd by Tocris
Inactive0-5.354.0950.9664-6.7999440 0 0 0 0 0 15.4374.94434.753.1663.05912-6.49995.437QC'd by Axon Medchem
Inactive0004-6.3793-1.7899-0.6034-0.4471-1.1982-1.16121.5608-6.3793QC'd by Tocris
Inactive0-4.750.80.915918-3.010640 0 0 0 0 0 013.5846-2.6459-2.5886-1.4907-4.59224.02455.379313.5846QC'd by MedChem Express
Inactive0004-0.1718-2.7451-1.5974-2.775-1.4013-1.0798-0.4332-0.1718QC'd by Tocris
Inactive0-4.254.95490.9713-25.1804-1.752740 0 0 0 0 0 0-20.9837-0.8831-2.3367-0.2106-1.3606-4.0325-0.9729-20.9837QC'd by Axon Medchem
Inactive0-4.451.64360.46727.5-7.674340 0 0 0 0 0 04.0193-6.5695-2.9715-6.8641-16.8119-3.3436-5.01744.0193QC'd by Axon Medchem
Inactive0004-8.0397-4.2819-2.9052-2.785-0.42681.6569-0.2368-8.0397QC'd by Tocris
Inactive00043.3582.45981.05123.37720.91660.32320.16613.358QC'd by Tocris
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:Luciferase [Photinus pyralis]
External ID: FLUC100
Protocol: NCGC Assay Protocol Summary:

Reagents: 50mM Tris acetate, pH 7.5; 10mM Mg acetate; 10uM D-luciferin (Sigma #L9504); 10uM ATP; 0.01% Tween-20; 0.05% BSA; 10nM P. pyralis luciferase (Sigma #L9506)
Control compounds used were two known firefly luciferase inhibitors (compounds (2) and (5) in Auld et al., 2010), and DMSO.

Assay Summary:
Three microliters containing firefly luciferase substrates in buffer (final concentrations: 50mM Tris acetate, pH 7.5, 10mM Mg acetate, 0.01% Tween-20, 0.05% BSA, 10uM D-luciferin, and 10uM ATP) are dispensed into each well of a Greiner white, solid-bottom 1536-well format plate using a flying reagent dispenser (FRD). These assay plates were then treated with 23nL of compound or DMSO using a Kalypsys pin tool, which allows for delivery of a 6-point interplate titration of each compound to the assay plate (quantitative HTS), with a final compound concentrations ranging from approximately 60muM to 7pM. One microliter of firefly luciferase in 500mM Tris-acetate buffer was then delivered by FRD to each well for a final enzyme concentration of 10nM. Luciferase activity was then measured using a ViewLux CCD imager (PerkinElmer), with an average exposure time of 2-30 seconds (2X binning, medium/high gain).

Keywords: NIH Roadmap, MLPCN, MLSMR, qHTS, miR-21, firefly luciferase, FLuc, miRNA.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.0007360000 uMActivity at 0.00368 uMActivity at 0.018 uMActivity at 0.092 uMActivity at 0.460 uMActivity at 2.300 uMActivity at 11.50 uMActivity at 57.50 uMCompound QC
Inactive40.6441.4220.8416.73120.91990.79760.644QC'd by "DPISMR"
Inactive42.34352.15212.96892.74162.84720.41112.3435QC'd by "DPISMR"
Inactive40.00150.3102-2.02731.33520.1332-0.30940.0015QC'd by "DPISMR"
Inactive40 0 0 0 0 0-0.17161.8652.02946.44762.37961.0274-0.1716QC'd by "DPISMR"
Inactive40 0 0 0 0 01.007-2.7011-0.17086.49912.00412.09671.007QC'd by "DPISMR"
Inactive40 0 0 0 0 0-1.11790.20496.1966-2.3909-2.16073.3301-1.1179QC'd by "DPISMR"
Inactive41.09492.87582.72841.6832.39681.14921.0949QC'd by "Enamine"
Inactive411.706114.523713.66923.910314.400215.012311.7061QC'd by "DPISMR"
Inactive4-0.88851.63653.59191.16423.17730.4167-0.8885QC'd by "Enamine"
Inactive41.4599-0.5382.53462.37523.35670.77211.4599QC'd by "DPISMR"
Inactive4-0.04271.21871.92551.54932.96770.0419-0.0427QC'd by "DPISMR"
Inhibitor37.93335.7734Partial curve; partial efficacy; poor fit-4.4214.95490.9772-33.77342-2.40 0 0 0 0 0-29.81120.92455.218-0.17231.08433.5778-29.8112QC'd by "DPISMR"
Inactive40 0 0 0 0 0-8.15691.33660.03721.43172.1732-0.2051-8.1569QC'd by "DPISMR"
Inactive40 0 0 0 0 0-2.06560.94922.39651.27311.48744.6957-2.0656QC'd by "DPISMR"
Inactive40.75931.31591.72011.71341.93143.16680.7593QC'd by "DPISMR"
Inactive40.762.95694.69134.99333.68572.58010.76QC'd by "DPISMR"
Inhibitor26.854526.7655Partial curve; partial efficacy; poor fit-4.5714.50450.9889-26.76550-2.40 0 0 0 0 0-26.0546-0.39711.5310.1508-1.9239-0.6216-26.0546QC'd by "Enamine"
Inactive41.72760.59362.47962.86622.87681.69721.7276QC'd by "DPISMR"
Inactive4-0.1439-1.24030.0246-0.25021.0119-0.5561-0.1439QC'd by "DPISMR"
Inactive40 0 0 0 0 0-3.34970.68682.3313-0.24711.6909-0.0071-3.3497QC'd by "DPISMR"
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:
External ID: cmt1a-sytravon-dr-C9F2sN
Protocol: Cell-based coincidence reporter assay to measure PMP22 gene transcription in S16 Pmp22-F2sN cells

PROTOCOL TABLE (format as described by Inglese J, Shamu CE and Guy RK. 2007)
SEQUENCE No. (e.g., 1, 2, 3, etc.); PARAMETER (e.g., Cells, Incubation, Reagent, etc.); VALUE and DESCRIPTION.
1. Cells. Add 500-1,000 cells in 4 uL in growth media (DMEM High Glucose, No Phenol Red media + 10% heat-inactivated FBS + 1% Pen/Strep supplemented media) per well into Greiner 1536-well white/solid bottom high base, TC-treated plates.
2. Compounds. Library compounds and controls added at 23nL per well, transferred by Pin Tool.
3. Incubation. Incubate plates at 37C, 5% CO2, 95% RH for 24 h.
4. Reagent. Add 3.5uL Nano-Glo Dual-Luciferase Reporter Assay System reagent 1: Lysis and FLuc reagent per well of Greiner 1536-well plates.
5. Incubation. Incubate plates at room temperature for 10 min., protect from light.
6. Detector. FLuc luminescence measured using CCD-based camera (Viewlux).
7. Reagent. Add 3.5uL Nano-Glo Dual-Luciferase Reporter Assay System reagent 2: Stop&Glo reagent per well of Greiner 1536-well plates.
8. Incubation. Incubate plates at room temperature for 10 min., protect from light.
9. Detector. NLuc luminescence measured using CCD-based camera (Viewlux).

NOTES (numbers refer to Sequence numbers above; values are from representative experiments)
6. Luminescence Read #1 (FLuc): Clear filter; Exposure = 10 sec, Gain = High, Speed = Slow, Binning = 2X
9. Luminescence Read #2 (NLuc): Clear filter; Exposure = 1 sec, Gain = High, Speed = Slow, Binning = 2X

REFERENCES:
1. Inglese J, Shamu CE and Guy RK, Reporting data from high throughput screening of small molecule libraries, Nature Chemical Biology, 2007, 3(8): 438-441. doi.org/10.1038/nchembio0807-438
2. Yasgar A, Shinn P, Jadhav A, Auld DS, Michael S, Zheng W, Austin CP, Inglese J and Simeonov A, Compound Management for Quantitative High-Throughput Screening. J. Assoc. Lab. Auto., 2008, 13: 79-89. doi: 10.1016/j.jala.2007.12.004
Comment: Disclaimer:
Although all reasonable efforts have been made to ensure the accuracy and reliability of the data, caution should be exercised when interpreting the results as artifacts are possible from nonspecific effects such as assay signal interference. The curve fitting and activity calls presented here are based on the NCATS analysis methods.

Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, with a ratio activity curve class of 4, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. For a ratio activity curve class = -1.1, score = 80+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 && abs(ratio.max_response) > 6*10, score = 60+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -2.1 || ( ratio.curve_class==-2.2 && abs(ratio.max_response) > 6*10), score = 40+abs((log_ac50+4.5)*inf_activity/20). For ratio.curve_class == -1.2 || ratio.curve_class == -2.2, score = 20+abs((log_ac50+4.5)*inf_activity/20). Inconclusive compounds, with a donor curve class other than 4, have PUBCHEM_ACTIVITY_SCORE of 10. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39.
PhenotypePotencyEfficacyAnalysis CommentActivity_Scorefluc-Phenotypefluc-Potencyfluc-Efficacyfluc-Analysis Commentfluc-Curve_Descriptionfluc-Fit_LogAC50fluc-Fit_HillSlopefluc-Fit_R2fluc-Fit_InfiniteActivityfluc-Fit_ZeroActivityfluc-Fit_CurveClassfluc-Excluded_Pointsfluc-Max_Responsefluc-Activity at 0.011 uMfluc-Activity at 0.113 uMfluc-Activity at 1.140 uMfluc-Activity at 11.50 uMfluc-Activity at 57.50 uMnluc-Phenotypenluc-Potencynluc-Efficacynluc-Analysis Commentnluc-Curve_Descriptionnluc-Fit_LogAC50nluc-Fit_HillSlopenluc-Fit_R2nluc-Fit_InfiniteActivitynluc-Fit_ZeroActivitynluc-Fit_CurveClassnluc-Excluded_Pointsnluc-Max_Responsenluc-Activity at 0.011 uMnluc-Activity at 0.113 uMnluc-Activity at 1.140 uMnluc-Activity at 11.50 uMnluc-Activity at 57.50 uM
Inactive21.17-48.8803510Inhibitor22.387258.0467Single point of activity-4.652.72020.9717-54.41273.634-30 0 0 0 0-49.93386.8137-2.6387.3863-4.5761-49.9338Inhibitor19.952648.9036Partial curve; partial efficacy; poor fit-4.71.62660.8503-54.5226-5.6191-2.40 0 0 0 0-47.8269-0.7604-18.9614-4.7345-18.9411-47.8269
Inactive1.06-61.1966510Inhibitor1.412588.4127Complete curve; high efficacy-5.8510.9962-86.24542.1673-1.10 0 0 0 0-82.67143.9823-7.369-36.1058-78.9285-82.6714Inhibitor0.707914.0204Complete curve; partial efficacy; poor fit-6.154.50450.6924-37.5163-23.4959-1.40 0 0 0 0-39.7219-30.1126-17.0799-35.8626-35.1344-39.7219
Inactive25.119-55.0123510Inhibitor25.118966.1523Single point of activity-4.61.59360.9924-59.15237-30 0 0 0 0-45.09325.986810.31064.641-7.6301-45.0932Inhibitor25.118981.876Partial curve; partial efficacy-4.61.41630.9815-84.2096-2.3337-2.20 0 0 0 0-64.9315-5.85283.4051-6.2854-22.1854-64.9315
Inactive31.623-90.537310Inhibitor31.6228133.602Single point of activity-4.52.04370.9723-127.40456.1975-31 0 0 0 0-96.959370.887215.7218-4.747-7.6655-96.9593Inhibitor31.6228116.0466Single point of activity-4.52.09370.9678-110.02286.0238-31 0 0 0 0-84.115378.206115.4092-4.0402-6.4051-84.1153
Inactive26.651-30.955610Inhibitor28.183842.9785Single point of activity-4.551.64360.939-41.47851.5-30 0 0 0 0-31.23216.8681-0.8812-2.7641-6.0977-31.2321Inhibitor25.118940.3149Partial curve; partial efficacy-4.61.24750.9782-40.8149-0.5-2.20 0 0 0 0-30.67911.88-0.7127-4.1595-10.5284-30.6791
Inactive9.456-28.9798510Inhibitor1032.2918Partial curve; partial efficacy; poor fit-54.95490.9895-27.79184.5-2.40 0 0 0 0-27.32652.15765.96885.7411-17.7386-27.3265Inhibitor8.912522.7179Complete curve; partial efficacy; poor fit-5.054.50450.9654-30.7598-8.0419-1.40 0 0 0 0-30.6332-11.2679-7.3322-5.4516-25.3127-30.6332
Inactive33.997-106.4667510Inhibitor28.1838123.4679Single point of activity-4.552.78680.9978-121.81581.6522-30 0 0 0 0-106.856-2.35042.79943.288-7.476-106.856Inhibitor39.8107129.942Single point of activity-4.44.95490.9948-124.11065.8313-30 0 0 0 0-106.07750.60885.50165.448310.5489-106.0775
Inactive31.623-99.1403510Inhibitor31.6228111.2998Single point of activity-4.52.30310.9986-109.3571.9428-30 0 0 0 0-86.79132.21663.7805-0.134-8.8661-86.7913Inhibitor31.6228129.2894Single point of activity-4.53.57220.9948-125.09114.1983-30 0 0 0 0-111.48948.4632-1.52966.38461.1397-111.4894
Inactive25.515-79.0012510Inhibitor11.2202140.7263Partial curve; high efficacy-4.950.70.9983-142.9098-2.1835-2.10 0 0 0 0-108.7593-5.0538-4.4278-26.943-72.8633-108.7593Inhibitor39.810752.2962Single point of activity-4.44.44950.8184-57.5919-5.2957-30 0 0 0 0-49.2432-16.8558-14.1666-8.9013-0.3376-49.2432
Inactive35.717-71.462210Inhibitor31.6228148.9114Partial curve; high efficacy-4.52.53340.9964-137.607711.3037-2.10 0 0 0 0-110.795314.801412.04715.88510.827-110.7953Inhibitor39.810754.324Single point of activity-4.44.95490.9648-39.608714.7153-30 0 0 0 0-32.129118.947514.39518.58417.5801-32.1291
Inactive33.552-136.9239510Inhibitor31.6228169.4614Single point of activity-4.52.95230.9984-166.50592.9555-30 0 0 0 0-141.58672.68266.1861-0.9364-5.5897-141.5867Inhibitor35.4813177.0866Single point of activity-4.452.58840.996-171.41055.6761-30 0 0 0 0-132.26129.64047.6498-0.597-3.3611-132.2612
Inactive21.679-10.22810Inhibitor39.810737.0982Partial curve; partial efficacy; poor fit-4.44.95490.9802-29.09828-2.40 0 0 0 0-23.83196.35667.46726.384811.1761-23.8319Activator3.548161.4894Single point of activity-5.453.24750.999967.98946.530 0 0 0 13.37596.09136.80017.908866.65493.3759
Inactive35.717-65.5593510Inhibitor31.622891.3675Single point of activity-4.52.30310.9998-88.0583.3095-31 0 0 0 0-69.7409-36.65864.06842.7745-4.8658-69.7409Inhibitor39.810773.2968Single point of activity-4.44.95490.987-71.65341.6434-31 0 0 0 0-61.3778-28.28551.699-2.93835.754-61.3778
Inactive37.646-178.0829510Inhibitor35.4813204.2262Single point of activity-4.453.92950.9986-199.68734.539-30 0 0 0 0-173.33960.22898.21896.36162.2048-173.3396Inhibitor39.8107216.7006Single point of activity-4.44.95490.9949-212.80983.8908-30 0 0 0 0-182.8263-4.17541.84896.224511.7119-182.8263
Inactive31.833-132.799510Inhibitor28.1838177.1402Partial curve; high efficacy-4.552.24810.9994-163.059614.0806-2.10 0 0 0 0-133.218613.791411.36314.9985-5.8977-133.2186Inhibitor35.4813160.7082Single point of activity-4.453.57220.9968-156.47364.2346-31 0 0 0 0-132.380427.1686-0.55328.77150.9846-132.3804
Inactive24.068-97.281810Inhibitor19.9526106.3249Partial curve; high efficacy-4.72.04790.9995-106.9593-0.6344-2.10 0 0 0 0-95.8417-1.735-0.41270.5025-27.1155-95.8417Inhibitor28.1838131.3148Partial curve; high efficacy-4.552.24810.9998-120.835610.4791-2.10 0 0 0 0-98.721911.584810.63879.6738-5.1973-98.7219
Inactive33.552-57.6865510Inhibitor31.622894.3569Single point of activity-4.52.58840.9899-74.937619.4193-30 0 0 0 0-58.465124.330114.628118.681513.2425-58.4651Inhibitor35.481388.8694Single point of activity-4.453.62720.9981-70.184518.6848-30 0 0 0 0-56.90820.99118.34716.933517.1087-56.908
Inactive39.811-43.085310Inhibitor39.810758.3239Single point of activity-4.44.44950.995-58.8699-0.546-30 0 0 0 0-49.4749-2.93430.98520.505-0.104-49.4749Inhibitor39.810742.6743Single point of activity-4.44.95490.9169-42.53480.1395-30 0 0 0 0-36.6957-7.03536.9097-0.33280.9745-36.6957
Inactive14.987-35.563510Inhibitor14.125457.7501Single point of activity-4.852.40640.927-41.1116.6401-30 0 0 0 0-39.941723.25885.413520.722-3.8378-39.9417Inhibitor15.848944.7755Single point of activity-4.82.33320.9662-32.569312.2063-30 0 0 0 0-31.185317.3467.431512.9691-2.6927-31.1853
Inactive23.753-117.871510Inhibitor25.1189171.2193Partial curve; high efficacy-4.61.59360.9978-156.533514.6858-2.10 0 0 0 0-120.78219.082811.609112.4763-22.8454-120.782Inhibitor22.3872147.7288Partial curve; high efficacy-4.652.24810.9824-130.272317.4565-2.10 0 0 0 0-114.96124.69115.062622.7253-8.6651-114.961
HepG2 Cytotoxicity Assay Measured in Cell-Based System Using Plate Reader - 7071-02_Inhibitor_Dose_DryPowder_Activity_Set16
来源:NCGC 靶标:Smad3 [Homo sapiens]
External ID: SMAD3101
Protocol: Suspensions of trypsinized HEPG2 CAGA-GFP cells were dispensed into white, tissue culture-treated, solid 1536-well plates at 5uL/well (1000 cells/well final concentration) in DMEM medium supplemented with 1% FBS. Plates were incubated at 37 degrees C for 2 hours, after which 23 nL of compounds or DMSO were delivered to each well using a pin tool. One uL of recombinant TGF-beta in DMEM (1% FBS) was then dispensed (500 pg/mL final concentration), and plates were incubated at 37 degrees C for 18 hours. The plates were measured on an Acumen eX3 Explorer plate reader for GFP fluorescence (ex488/em500-530). GFP values were calculated by determining the mean GFP fluorescence of individual cells, and compiling these values for each well to determine a total well GFP signal. The %Activity was determined from the corrected fluorescence values. A titration of the known TGF-B inhibitor SB431542 was included to monitor plate performance, while unstimulated HEPG2 (-TGF-B) control wells were used to normalize %Activity of identified inhibitors; unstimulated wells corresponded to 100%Activity (full inhibition), while stimulated cell controls (+DMSO) were used to normalize 0%Activity (no inhibition).

Concentration-response curves were fitted to the signals arising from the resulting fluorescence. The concentration-effect curves were then classified based on curve quality (r2), response magnitude and degree of measured activity, and compounds were subsequently categorized based on their curve class. Active inhibitors showed concentration-dependent decreases in GFP fluorescence, concordant with a decrease in TGF-B/SMAD3-driven GFP expression. Inactive compounds showed no effect on fluorescence signal.
Comment: Compound Ranking:

1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
PhenotypePotencyEfficacyAnalysis CommentCurve_DescriptionFit_LogAC50Fit_HillSlopeFit_R2Fit_InfiniteActivityFit_ZeroActivityFit_CurveClassExcluded_PointsMax_ResponseActivity at 0.018 uMActivity at 0.037 uMActivity at 0.074 uMActivity at 0.164 uMActivity at 0.369 uMActivity at 0.461 uMActivity at 0.737 uMActivity at 0.922 uMActivity at 1.840 uMActivity at 2.300 uMActivity at 3.690 uMActivity at 4.610 uMActivity at 9.231 uMActivity at 20.57 uMActivity at 46.10 uMActivity at 92.20 uMCompound QC
Inactive40 0 0 0 027.05699.939810.15150.16715.572127.0569QC'd by "Asinex Ltd."
Inactive40 0 0 0 1-4.9362-9.41412.0824-11.0493-7.696-4.9362QC'd by "Asinex Ltd."
Inactive40 0 0 0 15.95954.342-1.5624-2.6449-8.95385.9595QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-19.7473-1.4487.5701-38.1554-17.3097-19.7473QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-1.2351-5.5487-5.0573-16.62112.7653-1.2351QC'd by "Asinex Ltd."
Inactive40 0 0 0 07.1959-7.76824.48993.399213.37077.1959QC'd by "Asinex Ltd."
Inactive40 0 0 0 18.983315.3354.25354.1946-14.32368.9833QC'd by "Asinex Ltd."
Inactive40 0 0 0 07.9022-10.517413.4936-10.46867.23237.9022QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-11.834712.2839-2.7256-19.2666-5.8034-11.8347QC'd by "Asinex Ltd."
Inhibitor35.4813106.2444Single point of activity-4.454.44950.9934-109.7251-3.4808-30 0 0 0 0-84.6645-7.4849-2.0755-4.81140.1432-84.6645QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-3.6-2.07174.941415.4055-0.2463-3.6QC'd by "Asinex Ltd."
Inactive40 0 0 0 00.7641028.345612.16980.90780.7641QC'd by "Asinex Ltd."
Inactive40 0 0 0 1-3.7338-9.95590.39868.925512.5033-3.7338QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-1.77973.8831.182-4.1851.7497-1.7797QC'd by "Asinex Ltd."
Inhibitor15.848938.9608Single point of activity-4.83.67720.9889-35.46083.5-30 0 0 0 0-32.8842.06775.8192.7318-1.3119-32.884QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-3.7978.4821-2.183612.765.4907-3.797QC'd by "Asinex Ltd."
Inactive40 0 0 0 0-18.74991.02723.81520.51991.7606-18.7499QC'd by "Asinex Ltd."
Inactive40 0 0 0 00.46409.4101-6.52060.90670.464QC'd by "Asinex Ltd."
Inactive40 0 0 0 00.23719.7122-4.6112-6.6419-3.28890.2371QC'd by "Asinex Ltd."
Inactive40 0 0 0 13.67994.89241.7621-1.6686-4.49453.6799QC'd by "Asinex Ltd."