5-Hydroxy-2'-deoxyuridine

Modify Date: 2025-08-26 12:35:31

5-Hydroxy-2'-deoxyuridine Structure
5-Hydroxy-2'-deoxyuridine structure
Common Name 5-Hydroxy-2'-deoxyuridine
CAS Number 5168-36-5 Molecular Weight 244.20100
Density 1.698g/cm3 Boiling Point N/A
Molecular Formula C9H12N2O6 Melting Point N/A
MSDS N/A Flash Point N/A

 Use of 5-Hydroxy-2'-deoxyuridine


5-Hydroxy-2'-deoxyuridine (5-OHdU) is a major stable oxidation product of 2'-Deoxycytidine. 5-Hydroxy-2'-deoxyuridine can be incorporated into DNA in vitro by DNA polymerase[1].

 Names

Name 5-hydroxy-2'-deoxyuridine
Synonym More Synonyms

 5-Hydroxy-2'-deoxyuridine Biological Activity

Description 5-Hydroxy-2'-deoxyuridine (5-OHdU) is a major stable oxidation product of 2'-Deoxycytidine. 5-Hydroxy-2'-deoxyuridine can be incorporated into DNA in vitro by DNA polymerase[1].
Related Catalog
Target

Human Endogenous Metabolite

In Vitro To study the specificity of nucleotide incorporation opposite 5-hydroxypyrimidines in template DNA, 18- and 45-member oligodeoxyribonucleotides, containing an internal 2'-deoxy-5-hydroxyuridine (5-OHdU) in two different sequence contexts, were used. Translesion synthesis past 2'-deoxy-5-hydroxyuridine (5-OHdU) in both oligonucleotides occurred, but pauses both opposite, and one nucleotide prior to, the modified base in the template is observed. The specificity of nucleotide incorporation opposite 2'-deoxy-5-hydroxyuridine (5-OHdU) in the template is sequence context dependent. In one sequence context, dA is the principal nucleotide incorporated opposite 2'-deoxy-5-hydroxyuridine (5-OHdU). However in a second sequence context, dC is the predominant base incorporated opposite 2'-deoxy-5-hydroxyuridine (5-OHdU). In that same sequence context, dC is also the predominant nucleotide incorporated opposite 2'-deoxy-5-hydroxyuridine (5-OHdU)[1].
References

[1]. Purmal AA, et al. Major oxidative products of cytosine, 5-hydroxycytosine and 5-hydroxyuracil, exhibit sequence context-dependent mispairing in vitro. Nucleic Acids Res. 1994 Jan 11;22(1):72-8.

 Chemical & Physical Properties

Density 1.698g/cm3
Molecular Formula C9H12N2O6
Molecular Weight 244.20100
Exact Mass 244.07000
PSA 124.78000
Index of Refraction 1.654
Storage condition 2-8°C

 Synonyms

Uridine,2'-deoxy-5-hydroxy
2'-Deoxy-5-hydroxyuridine
Oh-5-du
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